{ "bcoid": "GLY_000516", "title": "Human Proteoform Citations (Literature Mining)", "description": "The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. ...", "filename": "human_proteoform_citations_glycosylation_literature_mining.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O00300-1...", "Deletion of ..." ], [ "O00555-8...", "Stroke-Like ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "O00300-1", "Deletion of aspartate 182 in OPG causes juvenile Paget's disease by impairing both protein secretion and binding to RANKL.", "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research", "2006 Mar", "Middleton-Hardie C, Zhu Q, Cundy H, Lin JM, Callon K, Tong PC, Xu J, Grey A, Cornish J, Naot D", "protein_xref_pubmed", "16491292", "protein_xref_automatic_literature_mining", "16491292", "" ], [ "O00555-8", "Stroke-Like Episodes and Cerebellar Syndrome in Phosphomannomutase Deficiency (PMM2-CDG): Evidence for Hypoglycosylation-Driven Channelopathy.", "International journal of molecular sciences", "2018 Feb 22", "Izquierdo-Serra M, Martinez-Monseny AF, Lopez L, Carrillo-Garcia J, Edo A, Ortigoza-Escobar JD, Garcia O, Cancho-Candela R, Carrasco-Marina ML, Gutierrez-Solana LG, Cuadras D, Muchart J, Montero R, Artuch R, Perez-Cerda C, Perez B, Perez-Duenas B, Macaya A, Fernandez-Fernandez JM, Serrano M", "protein_xref_pubmed", "29470411", "protein_xref_automatic_literature_mining", "29470411", "" ], [ "O00622-1", "O-Fucosylation of CCN1 is required for its secretion.", "FEBS letters", "2015 Oct 24", "Niwa Y, Suzuki T, Dohmae N, Simizu S", "protein_xref_pubmed", "26424659", "protein_xref_automatic_literature_mining", "26424659", "" ], [ "O14672-1", "Functional role of N-glycosylation from ADAM10 in processing, localization and activity of the enzyme.", "Biochimica et biophysica acta", "2008 Jun", "Escrevente C, Morais VA, Keller S, Soares CM, Altevogt P, Costa J", "protein_xref_pubmed", "18381078", "protein_xref_automatic_literature_mining", "18381078", "" ], [ "O14773-1", "N-glycosylation is crucial for folding, trafficking, and stability of human tripeptidyl-peptidase I.", "The Journal of biological chemistry", "2004 Mar 26", "Wujek P, Kida E, Walus M, Wisniewski KE, Golabek AA", "protein_xref_pubmed", "14702339", "protein_xref_automatic_literature_mining", "14702339", "" ], [ "O14786-1", "A Novel Physiological Glycosaminoglycan-Deficient Splice Variant of Neuropilin-1 Is Anti-Tumorigenic In Vitro and In Vivo.", "PloS one", "2016", "Hendricks C, Dubail J, Brohee L, Delforge Y, Colige A, Deroanne C", "protein_xref_pubmed", "27798666", "protein_xref_automatic_literature_mining", "27798666", "" ], [ "O15431-1", "O-linked glycosylation at threonine 27 protects the copper transporter hCTR1 from proteolytic cleavage in mammalian cells.", "The Journal of biological chemistry", "2007 Jul 13", "Maryon EB, Molloy SA, Kaplan JH", "protein_xref_pubmed", "17525160", "protein_xref_automatic_literature_mining", "17525160", "" ], [ "O15431-1", "Human copper transporter 1 lacking O-linked glycosylation is proteolytically cleaved in a Rab9-positive endosomal compartment.", "The Journal of biological chemistry", "2009 Oct 9", "Maryon EB, Zhang J, Jellison JW, Kaplan JH", "protein_xref_pubmed", "19684018", "protein_xref_automatic_literature_mining", "19684018", "" ], [ "O43490-1", "Mutation of N-linked glycosylation at Asn548 in CD133 decreases its ability to promote hepatoma cell growth.", "Oncotarget", "2015 Aug 21", "Liu Y, Ren S, Xie L, Cui C, Xing Y, Liu C, Cao B, Yang F, Li Y, Chen X, Wei Y, Lu H, Jiang J", "protein_xref_pubmed", "26029999", "protein_xref_automatic_literature_mining", "26029999", "" ], [ "O60779-1", "Functional role of specific amino acid residues in human thiamine transporter SLC19A2: mutational analysis.", "American journal of physiology. Gastrointestinal and liver physiology", "2002 Jul", "Balamurugan K, Said HM", "protein_xref_pubmed", "12065289", "protein_xref_automatic_literature_mining", "12065289", "" ], [ "O60911-1", "Determination of cathepsin V activity and intracellular trafficking by N-glycosylation.", "FEBS letters", "2012 Oct 19", "Niwa Y, Suzuki T, Dohmae N, Umezawa K, Simizu S", "protein_xref_pubmed", "22967898", "protein_xref_automatic_literature_mining", "22967898", "" ], [ "O75355-1", "Asparagine 81, an invariant glycosylation site near apyrase conserved region 1, is essential for full enzymatic activity of ecto-nucleoside triphosphate diphosphohydrolase 3.", "Archives of biochemistry and biophysics", "2003 May 1", "Murphy DM, Kirley TL", "protein_xref_pubmed", "12706347", "protein_xref_automatic_literature_mining", "12706347", "" ], [ "O75355-1", "Conserved lysine 79 is important for activity of ecto-nucleoside triphosphate diphosphohydrolase 3 (NTPDase3).", "Purinergic signalling", "2004 Dec", "Basu S, Murphy-Piedmonte DM, Kirley TL", "protein_xref_pubmed", "18404400", "protein_xref_automatic_literature_mining", "18404400", "" ], [ "O75355-1", "Various N-glycoforms differentially upregulate E-NTPDase activity of the NTPDase3/CD39L3 ecto-enzymatic domain.", "Purinergic signalling", "2017 Dec", "Zhong AH, Gordon Jiang Z, Cummings RD, Robson SC", "protein_xref_pubmed", "28956227", "protein_xref_automatic_literature_mining", "28956227", "" ], [ "O94856-1", "Specific contactin N-glycans are implicated in neurofascin binding and autoimmune targeting in peripheral neuropathies.", "The Journal of biological chemistry", "2014 Mar 14", "Labasque M, Hivert B, Nogales-Gadea G, Querol L, Illa I, Faivre-Sarrailh C", "protein_xref_pubmed", "24497634", "protein_xref_automatic_literature_mining", "24497634", "" ], [ "O95180-1", "Surface expression and function of Cav3.2 T-type calcium channels are controlled by asparagine-linked glycosylation.", "Pflugers Archiv : European journal of physiology", "2013 Aug", "Weiss N, Black SA, Bladen C, Chen L, Zamponi GW", "protein_xref_pubmed", "23503728", "protein_xref_automatic_literature_mining", "23503728", "" ], [ "O95255-1", "Subcellular localization and N-glycosylation of human ABCC6, expressed in MDCKII cells.", "Biochemical and biophysical research communications", "2003 Aug 22", "Sinko E, Ilias A, Ujhelly O, Homolya L, Scheffer GL, Bergen AA, Sarkadi B, Varadi A", "protein_xref_pubmed", "12901863", "protein_xref_automatic_literature_mining", "12901863", "" ], [ "O95445-1", "Proposed lipocalin fold for apolipoprotein M based on bioinformatics and site-directed mutagenesis.", "FEBS letters", "2001 Jun 15", "Duan J, Dahlback B, Villoutreix BO", "protein_xref_pubmed", "11418126", "protein_xref_automatic_literature_mining", "11418126", "" ], [ "O95832-1", "Claudin-1 required for HCV virus entry has high potential for phosphorylation and O-glycosylation.", "Virology journal", "2011 May 15", "Ahmad W, Shabbiri K, Ijaz B, Asad S, Sarwar MT, Gull S, Kausar H, Fouzia K, Shahid I, Hassan S", "protein_xref_pubmed", "21569618", "protein_xref_automatic_literature_mining", "21569618", "" ], [ "O95980-1", "RECK-mediated suppression of tumor cell invasion is regulated by glycosylation in human tumor cell lines.", "Cancer research", "2005 Aug 15", "Simizu S, Takagi S, Tamura Y, Osada H", "protein_xref_pubmed", "16103099", "protein_xref_automatic_literature_mining", "16103099", "" ], [ "P00450-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P00738-1", "Glycosylation status of haptoglobin in sera of patients with prostate cancer vs. benign prostate disease or normal subjects.", "International journal of cancer", "2008 Jan 1", "Fujimura T, Shinohara Y, Tissot B, Pang PC, Kurogochi M, Saito S, Arai Y, Sadilek M, Murayama K, Dell A, Nishimura S, Hakomori SI", "protein_xref_pubmed", "17803183", "protein_xref_automatic_literature_mining", "17803183", "" ], [ "P00738-1", "Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: a novel approach for the development of tumor markers.", "International journal of cancer", "2008 May 15", "Nakano M, Nakagawa T, Ito T, Kitada T, Hijioka T, Kasahara A, Tajiri M, Wada Y, Taniguchi N, Miyoshi E", "protein_xref_pubmed", "18214858", "protein_xref_automatic_literature_mining", "18214858", "" ], [ "P00738-1", "Glycoproteomic analysis and molecular modeling of haptoglobin multimers.", "Electrophoresis", "2011 Jun", "Boonyapranai K, Tsai HY, Chen MC, Sriyam S, Sinchaikul S, Phutrakul S, Chen ST", "protein_xref_pubmed", "21692080", "protein_xref_automatic_literature_mining", "21692080", "" ], [ "P00738-1", "alpha1-3/4 fucosylation at Asn 241 of beta-haptoglobin is a novel marker for colon cancer: a combinatorial approach for development of glycan biomarkers.", "International journal of cancer", "2012 May 15", "Park SY, Lee SH, Kawasaki N, Itoh S, Kang K, Hee Ryu S, Hashii N, Kim JM, Kim JY, Hoe Kim J", "protein_xref_pubmed", "21780104", "protein_xref_automatic_literature_mining", "21780104", "" ], [ "P00738-1", "Site-specific and linkage analyses of fucosylated N-glycans on haptoglobin in sera of patients with various types of cancer: possible implication for the differential diagnosis of cancer.", "Glycoconjugate journal", "2016 Jun", "Takahashi S, Sugiyama T, Shimomura M, Kamada Y, Fujita K, Nonomura N, Miyoshi E, Nakano M", "protein_xref_pubmed", "26869352", "protein_xref_automatic_literature_mining", "26869352", "" ], [ "P00738-1", "Characteristic glycopeptides associated with extreme human longevity identified through plasma glycoproteomics.", "Biochimica et biophysica acta. General subjects", "2018 Jun", "Miura Y, Hashii N, Ohta Y, Itakura Y, Tsumoto H, Suzuki J, Takakura D, Abe Y, Arai Y, Toyoda M, Kawasaki N, Hirose N, Endo T", "protein_xref_pubmed", "29580922", "protein_xref_automatic_literature_mining", "29580922", "" ], [ "P00742-1", "The missense Thr211Pro mutation in the factor X activation peptide of a bleeding patient causes molecular defect in the clotting cascade.", "Thrombosis and haemostasis", "2013 Jul", "Ding Q, Shen Y, Yang L, Wang X, Rezaie AR", "protein_xref_pubmed", "23677006", "protein_xref_automatic_literature_mining", "23677006", "" ], [ "P01009-1", "Comprehensive glyco-proteomic analysis of human alpha1-antitrypsin and its charge isoforms.", "Proteomics", "2006 Jun", "Kolarich D, Weber A, Turecek PL, Schwarz HP, Altmann F", "protein_xref_pubmed", "16622833", "protein_xref_automatic_literature_mining", "16622833", "" ], [ "P01009-1", "The analysis of alpha-1-antitrypsin glycosylation with direct LC-MS/MS.", "Electrophoresis", "2018 Sep", "Yin H, An M, So PK, Wong MY, Lubman DM, Yao Z", "protein_xref_pubmed", "29405331", "protein_xref_automatic_literature_mining", "29405331", "" ], [ "P01009-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P01042-1", "N-linked glycosylation of the human bradykinin B2 receptor is required for optimal cell-surface expression and coupling.", "Biological chemistry", "2004 Jan", "Michineau S, Muller L, Pizard A, Alhenc-Gelas F, Rajerison RM", "protein_xref_pubmed", "14977046", "protein_xref_automatic_literature_mining", "14977046", "" ], [ "P01106-1", "c-Myc is glycosylated at threonine 58, a known phosphorylation site and a mutational hot spot in lymphomas.", "The Journal of biological chemistry", "1995 Aug 11", "Chou TY, Hart GW, Dang CV", "protein_xref_pubmed", "7642555", "protein_xref_automatic_literature_mining", "7642555", "" ], [ "P01106-1", "Dynamic interplay between O-glycosylation and O-phosphorylation of nucleocytoplasmic proteins: alternative glycosylation/phosphorylation of THR-58, a known mutational hot spot of c-Myc in lymphomas, is regulated by mitogens.", "The Journal of biological chemistry", "2002 May 24", "Kamemura K, Hayes BK, Comer FI, Hart GW", "protein_xref_pubmed", "11904304", "protein_xref_automatic_literature_mining", "11904304", "" ], [ "P01591-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P01854-1", "Structure and function of IgE myeloma protein VL from an atopic patient.", "International archives of allergy and immunology", "1996 Jun", "Zavazal V, Krauz V, Kratzin H, Hilschmann N", "protein_xref_pubmed", "8645991", "protein_xref_automatic_literature_mining", "8645991", "" ], [ "P01876-1", "The glycosylation and structure of human serum IgA1, Fab, and Fc regions and the role of N-glycosylation on Fcalpha receptor interactions.", "The Journal of biological chemistry", "1998 Jan 23", "Mattu TS, Pleass RJ, Willis AC, Kilian M, Wormald MR, Lellouch AC, Rudd PM, Woof JM, Dwek RA", "protein_xref_pubmed", "9442070", "protein_xref_automatic_literature_mining", "9442070", "" ], [ "P02730-1", "Calnexin interaction with N-glycosylation mutants of a polytopic membrane glycoprotein, the human erythrocyte anion exchanger 1 (band 3).", "The Journal of biological chemistry", "1999 Jun 18", "Popov M, Reithmeier RA", "protein_xref_pubmed", "10364201", "protein_xref_automatic_literature_mining", "10364201", "" ], [ "P02730-1", "Topology studies with biosynthetic fragments identify interacting transmembrane regions of the human red-cell anion exchanger (band 3; AE1).", "The Biochemical journal", "1999 Dec 15", "Groves JD, Tanner MJ", "protein_xref_pubmed", "10585855", "protein_xref_automatic_literature_mining", "10585855", "" ], [ "P02730-1", "Processing of N-linked oligosaccharide depends on its location in the anion exchanger, AE1, membrane glycoprotein.", "The Biochemical journal", "2000 Jul 1", "Li J, Quilty J, Popov M, Reithmeier RA", "protein_xref_pubmed", "10861210", "protein_xref_automatic_literature_mining", "10861210", "" ], [ "P02730-1", "Topology of the anion exchange protein AE1: the controversial sidedness of lysine 743.", "Biochemistry", "2002 Mar 12", "Kuma H, Shinde AA, Howren TR, Jennings ML", "protein_xref_pubmed", "11876646", "protein_xref_automatic_literature_mining", "11876646", "" ], [ "P02730-1", "Membrane integration and topology of the first transmembrane segment in normal and Southeast Asian ovalocytosis human erythrocyte anion exchanger 1.", "Molecular membrane biology", "2005 May-Jun", "Cheung JC, Reithmeier 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"protein_xref_automatic_literature_mining", "16716077", "" ], [ "P02786-1", "Identification of the O-linked glycosylation site of the human transferrin receptor.", "Glycobiology", "1992 Aug", "Hayes GR, Enns CA, Lucas JJ", "protein_xref_pubmed", "1421757", "protein_xref_automatic_literature_mining", "1421757", "" ], [ "P02787-1", "N-glycosylation at Asn(491) in the Asn-Xaa-Cys motif of human transferrin.", "FEBS letters", "2004 Oct 8", "Satomi Y, Shimonishi Y, Takao T", "protein_xref_pubmed", "15474009", "protein_xref_automatic_literature_mining", "15474009", "" ], [ "P02787-1", "Site-specific carbohydrate profiling of human transferrin by nano-flow liquid chromatography/electrospray ionization mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Satomi Y, Shimonishi Y, Hase T, Takao T", "protein_xref_pubmed", "15536627", "protein_xref_automatic_literature_mining", "15536627", "" ], [ "P02787-1", "Structural change of N-glycan exposes hydrophobic surface of human transferrin.", "Glycobiology", "2014 Aug", "Nagae M, Morita-Matsumoto K, Arai S, Wada I, Matsumoto Y, Saito K, Hashimoto Y, Yamaguchi Y", "protein_xref_pubmed", "24780636", "protein_xref_automatic_literature_mining", "24780636", "" ], [ "P02787-1", "In situ visualization of a glycoform of transferrin: localization of alpha2,6-sialylated transferrin in the liver.", "Journal of biochemistry", "2015 Apr", "Matsumoto Y, Saito T, Hoshi K, Ito H, Kariya Y, Nagae M, Yamaguchi Y, Hagiwara Y, Kinoshita N, Wada I, Saito K, Honda T, Hashimoto Y", "protein_xref_pubmed", "25425657", "protein_xref_automatic_literature_mining", "25425657", "" ], [ "P02787-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P02790-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P03956-1", "N-glycan structures of matrix metalloproteinase-1 derived from human fibroblasts and from HT-1080 fibrosarcoma cells.", "European journal of biochemistry", "1999 Feb", "Saarinen J, Welgus HG, Flizar CA, Kalkkinen N, Helin J", "protein_xref_pubmed", "10092871", "protein_xref_automatic_literature_mining", "10092871", "" ], [ "P04004-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P04070-1", "Purification of protein C from canine plasma.", "BMC veterinary research", "2014 Oct 18", "Wong VM, Bienzle D, Hayes MA, Taylor P, Wood RD", "protein_xref_pubmed", "25326145", "protein_xref_automatic_literature_mining", "25326145", "" ], [ "P04141-1", "Specific in vitro O-glycosylation of human granulocyte-macrophage colony-stimulating-factor-derived peptides by O-glycosyltransferases of yeast and rat liver cells.", "European journal of biochemistry", "1992 May 1", "Lorenz C, Strahl-Bolsinger S, Ernst JF", "protein_xref_pubmed", "1576999", "protein_xref_automatic_literature_mining", "1576999", "" ], [ "P04141-1", "N- and O-linked carbohydrates and glycosylation site occupancy in recombinant human granulocyte-macrophage colony-stimulating factor secreted by a Chinese hamster ovary cell line.", "European journal of biochemistry", "2004 Mar", "Forno G, Bollati Fogolin M, Oggero M, Kratje R, Etcheverrigaray M, Conradt HS, Nimtz M", "protein_xref_pubmed", "15009203", "protein_xref_automatic_literature_mining", "15009203", "" ], [ "P04141-1", "O-glycans and O-glycosylation sites of recombinant human GM-CSF 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"26773038", "protein_xref_automatic_literature_mining", "26773038", "" ], [ "P04275-1", "Site-specific analysis of von Willebrand factor O-glycosylation.", "Journal of thrombosis and haemostasis : JTH", "2016 Apr", "Solecka BA, Weise C, Laffan MA, Kannicht C", "protein_xref_pubmed", "26784534", "protein_xref_automatic_literature_mining", "26784534", "" ], [ "P05155-1", "Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM.", "Journal of proteomics", "2018 Oct 30", "Ma J, Sanda M, Wei R, Zhang L, Goldman R", "protein_xref_pubmed", "29427759", "protein_xref_automatic_literature_mining", "29427759", "" ], [ "P05186-1", "Glycosylation-deficient mutations in tissue-nonspecific alkaline phosphatase impair its structure and function and are linked to infantile hypophosphatasia.", "The FEBS journal", "2016 Mar", "Komaru K, Satou Y, Al-Shawafi HA, Numa-Kinjoh N, Sohda M, Oda K", "protein_xref_pubmed", "26797772", "protein_xref_automatic_literature_mining", 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Desnick RJ", "protein_xref_pubmed", "9620884", "protein_xref_automatic_literature_mining", "9620884", "" ], [ "P06858-1", "Regulation of secretion and enzymatic activity of lipoprotein lipase by C-mannosylation.", "Biochemical and biophysical research communications", "2017 Apr 29", "Okamoto S, Murano T, Suzuki T, Uematsu S, Niwa Y, Sasazawa Y, Dohmae N, Bujo H, Simizu S", "protein_xref_pubmed", "28327359", "protein_xref_automatic_literature_mining", "28327359", "" ], [ "P07196-1", "Cytoplasmic O-GlcNAc modification of the head domain and the KSP repeat motif of the neurofilament protein neurofilament-H.", "The Journal of biological chemistry", "1996 Aug 23", "Dong DL, Xu ZS, Hart GW, Cleveland DW", "protein_xref_pubmed", "8702840", "protein_xref_automatic_literature_mining", "8702840", "" ], [ "P07204-1", "Recombinant human thrombomodulin. Regulation of cofactor activity and anticoagulant function by a glycosaminoglycan side chain.", "The Biochemical journal", "1992 Apr 1", "Parkinson JF, Vlahos CJ, Yan SC, Bang NU", "protein_xref_pubmed", "1314561", "protein_xref_automatic_literature_mining", "1314561", "" ], [ "P07204-1", "Structural analysis of a glycoprotein by liquid chromatography-mass spectrometry and liquid chromatography with tandem mass spectrometry. Application to recombinant human thrombomodulin.", "Journal of chromatography. A", "2002 Nov 29", "Itoh S, Kawasaki N, Ohta M, Hayakawa T", "protein_xref_pubmed", "12458951", "protein_xref_automatic_literature_mining", "12458951", "" ], [ "P07288-1", "Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.", "Journal of proteome research", "2014 Dec 5", "Song E, Mayampurath A, Yu CY, Tang H, Mechref Y", "protein_xref_pubmed", "25327667", "protein_xref_automatic_literature_mining", "25327667", "" ], [ "P07288-1", "Characterization of the Glycosylation Site of Human PSA Prompted by Missense Mutation using LC-MS/MS.", "Journal of proteome research", "2015 Jul 2", "Song E, Hu Y, Hussein A, Yu CY, Tang H, Mechref Y", "protein_xref_pubmed", "26022737", "protein_xref_automatic_literature_mining", "26022737", "" ], [ "P07550-1", "N-glycosylation of the beta2 adrenergic receptor regulates receptor function by modulating dimerization.", "The FEBS journal", "2017 Jul", "Li X, Zhou M, Huang W, Yang H", "protein_xref_pubmed", "28467637", "protein_xref_automatic_literature_mining", "28467637", "" ], [ "P07988-1", "Differences in N-linked glycosylation between human surfactant protein-B variants of the C or T allele at the single-nucleotide polymorphism at position 1580: implications for disease.", "The Biochemical journal", "2003 Jan 1", "Wang G, Christensen ND, Wigdahl B, Guttentag SH, Floros J", "protein_xref_pubmed", "12356334", "protein_xref_automatic_literature_mining", "12356334", "" ], [ "P08473-1", "The human CD10 lacking an N-glycan at Asn(628) is deficient in surface expression and neutral endopeptidase activity.", "Biochimica et biophysica acta", "2012 Nov", "Sato B, Katagiri YU, Iijima K, Yamada H, Ito S, Kawasaki N, Okita H, Fujimoto J, Kiyokawa N", "protein_xref_pubmed", "22766194", "protein_xref_automatic_literature_mining", "22766194", "" ], [ "P08575-3", "Regulation of galectin-3-induced apoptosis of Jurkat cells by both O-glycans and N-glycans on CD45.", "FEBS letters", "2013 Dec 11", "Xue J, Gao X, Fu C, Cong Z, Jiang H, Wang W, Chen T, Wei Q, Qin C", "protein_xref_pubmed", "24211831", "protein_xref_automatic_literature_mining", "24211831", "" ], [ "P08588-1", "Glycosylation of beta(1)-adrenergic receptors regulates receptor surface expression and dimerization.", "Biochemical and biophysical research communications", "2002 Sep 27", "He J, Xu J, Castleberry AM, Lau AG, Hall RA", "protein_xref_pubmed", "12270132", "protein_xref_automatic_literature_mining", "12270132", "" ], [ "P08588-1", "Human beta1-adrenergic receptor is subject to constitutive and regulated N-terminal cleavage.", "The Journal of biological chemistry", "2010 Sep 10", "Hakalahti AE, Vierimaa MM, Lilja MK, Kumpula EP, Tuusa JT, Petaja-Repo UE", "protein_xref_pubmed", "20587416", "protein_xref_automatic_literature_mining", "20587416", "" ], [ "P08648-1", "N-Glycosylation of integrin alpha5 acts as a switch for EGFR-mediated complex formation of integrin alpha5beta1 to alpha6beta4.", "Scientific reports", "2016 Sep 19", "Hang Q, Isaji T, Hou S, Zhou Y, Fukuda T, Gu J", "protein_xref_pubmed", "27641064", "protein_xref_automatic_literature_mining", "27641064", "" ], [ "P08842-1", "Effects of mutations and glycosylations on STS activity: a site-directed mutagenesis study.", "Molecular and cellular endocrinology", "2008 Feb 13", "Stengel C, Newman SP, Day JM, Tutill HJ, Reed MJ, Purohit A", "protein_xref_pubmed", "18180093", "protein_xref_automatic_literature_mining", "18180093", "" ], [ "P09958-1", "10mM glucosamine prevents activation of proADAMTS5 (aggrecanase-2) in transfected cells by interference with post-translational modification of furin.", "Osteoarthritis and cartilage", "2010 Mar", "McCulloch DR, Wylie JD, Longpre JM, Leduc R, Apte SS", "protein_xref_pubmed", "19909832", "protein_xref_automatic_literature_mining", "19909832", "" ], [ "P0DN86-1", "Site-specific glycan analysis of human chorionic gonadotropin beta-subunit from malignancies and pregnancy by liquid chromatography--electrospray mass spectrometry.", "Glycobiology", "2006 Dec", "Valmu L, Alfthan H, Hotakainen K, Birken S, Stenman UH", "protein_xref_pubmed", "16880503", "protein_xref_automatic_literature_mining", "16880503", "" ], [ "P10909-1", "Clusterin glycopeptide variant characterization reveals significant site-specific glycan changes in the plasma of clear cell renal cell carcinoma.", "Journal of proteome research", "2015 Jun 5", "Gbormittah FO, Bones J, Hincapie M, Tousi F, Hancock WS, Iliopoulos O", "protein_xref_pubmed", "25855029", "protein_xref_automatic_literature_mining", "25855029", "" ] ] }, "readme": "Name\n - Human Proteoform Citations (Literature Mining)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-06-26T15:29:27.375356\n\nModified on\n - 2021-06-04T09:49:02.580309\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - Literature\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_citations_glycosylation_literature_mining.csv\n Name: human_proteoform_citations_glycosylation_literature_mining.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_citations_glycosylation_literature_mining.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"191\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"229\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"88\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"217\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"228\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"229\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"229\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_proteoform_citations_glycosylation_literature_mining.csv" }