{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P31392-1...", "Effects of a..." ], [ "D3ZS29-1...", "TNF-alpha up..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P31392-1", "Effects of adrenomedullin on the glomerular adrenomedullin system in a rat model of anti-thy1 glomerulonephritis.", "Nephron. Experimental nephrology", "2010", "Geissler B, Plank C, Hartner A, Amann K, Struwe FG, Hilgers KF, Rascher W, Dotsch J", "protein_xref_pubmed", "20431304", "protein_xref_refseq", "NP_445754" ], [ "D3ZS29-1", "TNF-alpha up-regulates Nanog by activating NF-kappaB pathway to induce primary rat spinal cord astrocytes dedifferentiation.", "Life sciences", "2021 Dec 15", "Ding Z, Dai C, Shan W, Liu R, Lu W, Gao W, Zhang H, Huang W, Guan J, Yin Z", "protein_xref_pubmed", "34758295", "protein_xref_refseq", "NP_001094251" ], [ "B1H259-1", "Ultrastructural co-localization of cochlin and type II collagen in the rat semicircular canal.", "Neuroscience letters", "2008 Mar 21", "Mizuta K, Ikezono T, Iwasaki S, Arai M, Hashimoto Y, Pawankar R, Watanabe T, Shindo S, Mineta H", "protein_xref_pubmed", "18304733", "protein_xref_refseq", "NP_001102180" ], [ "Q9QYK2-1", "The coactivator PGC-1 is involved in the regulation of the liver carnitine palmitoyltransferase I gene expression by cAMP in combination with HNF4 alpha and cAMP-response element-binding protein (CREB).", "The Journal of biological chemistry", "2002 Oct 11", "Louet JF, Hayhurst G, Gonzalez FJ, Girard J, Decaux JF", "protein_xref_pubmed", "12107181", "protein_xref_refseq", "NP_112637" ], [ "Q99P85-1", "Hypoxia-Induced Mitogenic Factor Acts as a Nonclassical Ligand of Calcium-Sensing Receptor, Therapeutically Exploitable for Intermittent Hypoxia-Induced Pulmonary Hypertension.", "Hypertension (Dallas, Tex. : 1979)", "2017 May", "Zeng X, Zhu L, Xiao R, Liu B, Sun M, Liu F, Hao Q, Lu Y, Zhang J, Li J, Wang T, Wei X, Hu Q", "protein_xref_pubmed", "28348014", "protein_xref_refseq", "NP_445785" ], [ "Q03114-1", "Diabetes-Induced H3K9 Hyperacetylation Promotes Development of Alzheimer's Disease Through CDK5.", "Journal of Alzheimer's disease : JAD", "2020", "Cai HB, Fan ZZ, Tian T, Li ZC, Zhao CC, Guo WT, Ge ZM", "protein_xref_pubmed", "32310180", "protein_xref_refseq", "NP_543161" ], [ "P56932-1", "The protein phosphatase 2A regulatory subunits B'beta and B'delta mediate sustained TrkA neurotrophin receptor autophosphorylation and neuronal differentiation.", "Molecular and cellular biology", "2009 Feb", "Van Kanegan MJ, Strack S", "protein_xref_pubmed", "19029245", "protein_xref_refseq", "NP_653347" ], [ "Q6DGF8-1", "Expression of new loci associated with obesity in diet-induced obese rats: from genetics to physiology.", "Obesity (Silver Spring, Md.)", "2012 Feb", "Gutierrez-Aguilar R, Kim DH, Woods SC, Seeley RJ", "protein_xref_pubmed", "21779089", "protein_xref_refseq", "NP_001007749" ], [ "Q63085-1", "Acylated and unacylated ghrelin attenuate isoproterenol-induced lipolysis in isolated rat visceral adipocytes through activation of phosphoinositide 3-kinase gamma and phosphodiesterase 3B.", "Biochimica et biophysica acta", "2011 Jun", "Baragli A, Ghe C, Arnoletti E, Granata R, Ghigo E, Muccioli G", "protein_xref_pubmed", "21435395", "protein_xref_refseq", "NP_058925" ], [ "P62914-1", "Proapoptotic Requirement of Ribosomal Protein L11 in Ribosomal Stress-Challenged Cortical Neurons.", "Molecular neurobiology", "2018 Jan", "Slomnicki LP, Hallgren J, Vashishta A, Smith SC, Ellis SR, Hetman M", "protein_xref_pubmed", "27975169", "protein_xref_refseq", "NP_001020910" ], [ "Q63664-1", "Mitochondrial ATP-sensitive potassium channel regulates mitochondrial dynamics to participate in neurodegeneration of Parkinson's disease.", "Biochimica et biophysica acta. Molecular basis of disease", "2018 Apr", "Peng K, Hu J, Xiao J, Dan G, Yang L, Ye F, Zou Z, Cao J, Sai Y", "protein_xref_pubmed", "29353068", "protein_xref_refseq", "NP_058795" ], [ "P04166-1", "Influence of point mutations on the flexibility of cytochrome b5: molecular dynamics simulations of holoproteins.", "Biopolymers", "2006 Oct 15", "Cheng Q, Benson DR, Rivera M, Kuczera K", "protein_xref_pubmed", "16807901", "protein_xref_refseq", "NP_085075" ], [ "P07808-1", "Neuropeptide Y regulates proliferation and apoptosis in granulosa cells in a follicular stage-dependent manner.", "Journal of ovarian research", "2020 Jan 8", "Urata Y, Salehi R, Lima PDA, Osuga Y, Tsang BK", "protein_xref_pubmed", "31915051", "protein_xref_refseq", "NP_036746" ], [ "D4ABK7-1", "hnRNP H and hnRNP F complex with Fox2 to silence fibroblast growth factor receptor 2 exon IIIc.", "Molecular and cellular biology", "2008 Sep", "Mauger DM, Lin C, Garcia-Blanco MA", "protein_xref_pubmed", "18573884", "protein_xref_refseq", "NP_001102002" ], [ "P32089-1", "Starvation-induced posttranscriptional control of rat liver mitochondrial citrate carrier expression.", "Biochemical and biophysical research communications", "2002 Dec 6", "Siculella L, Sabetta S, di Summa R, Leo M, Giudetti AM, Palmieri F, Gnoni GV", "protein_xref_pubmed", "12445817", "protein_xref_refseq", "NP_059003" ], [ "P10824-1", "Nanosecond Dynamics of Galphai1 Bound to Nucleotides or Ric-8A, a Galpha Chaperone with GEF Activity.", "Biophysical journal", "2016 Aug 23", "Black LA, Thomas CJ, Nix GN, Terwilliger MC, Sprang SR, Ross JBA", "protein_xref_pubmed", "27558716", "protein_xref_refseq", "NP_037277" ], [ "Q6MGB4-1", "Hyperglycemia-Induced Changes in ZIP7 and ZnT7 Expression Cause Zn(2+) Release From the Sarco(endo)plasmic Reticulum and Mediate ER Stress in the Heart.", "Diabetes", "2017 May", "Tuncay E, Bitirim VC, Durak A, Carrat GRJ, Taylor KM, Rutter GA, Turan B", "protein_xref_pubmed", "28232492", "protein_xref_refseq", "NP_001008885" ], [ "A0A096MJ99-1", "The vSNAREs VAMP2 and VAMP4 control recycling and intracellular sorting of post-synaptic receptors in neuronal dendrites.", "Cell reports", "2021 Sep 7", "Bakr M, Jullie D, Krapivkina J, Paget-Blanc V, Bouit L, Petersen JD, Retailleau N, Breillat C, Herzog E, Choquet D, Perrais D", "protein_xref_pubmed", "34496238", "protein_xref_refseq", "NP_001102326" ], [ "D4A0W4-1", "Bcl11b regulates enamel matrix protein expression and dental epithelial cell differentiation during rat tooth development.", "Molecular medicine reports", "2017 Jan", "Li Z, Chen G, Yang Y, Guo W, Tian W", "protein_xref_pubmed", "27959403", "protein_xref_refseq", "NP_001264216" ], [ "D4AE24-1", "Protein kinase Calpha is implicated in cholecystokinin-induced activation of 70-kd S6 kinase in AR42J cells.", "Pancreas", "2005 Jan", "Yutsudo Y, Kido Y, Okabayashi Y, Matsumoto M, Ogawa W, Ohba M, Kuroki T, Kasuga M", "protein_xref_pubmed", "15632699", "protein_xref_refseq", "NP_001010962" ], [ "P26255-1", "Opposite Effects of Voluntary Physical Exercise on beta3-Adrenergic Receptors in the White and Brown Adipose Tissue.", "Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme", "2019 Sep", "Balagova L, Graban J, Puhova A, Jezova D", "protein_xref_pubmed", "31295748", "protein_xref_refseq", "NP_037240" ], [ "Q66HA4-1", "Loss of TAX1BP1-Directed Autophagy Results in Protein Aggregate Accumulation in the Brain.", "Molecular cell", "2020 Dec 3", "Sarraf SA, Shah HV, Kanfer G, Pickrell AM, Holtzclaw LA, Ward ME, Youle RJ", "protein_xref_pubmed", "33207181", "protein_xref_refseq", "NP_001004199" ], [ "P13668-1", "Stathmin is enriched in the developing corticospinal tract.", "Molecular and cellular neurosciences", "2015 Nov", "Fuller HR, Slade R, Jovanov-Milosevic N, Babic M, Sedmak G, Simic G, Fuszard MA, Shirran SL, Botting CH, Gates MA", "protein_xref_pubmed", "26370173", "protein_xref_refseq", "NP_058862" ], [ "P35284-1", "Rab12 Regulates Retrograde Transport of Mast Cell Secretory Granules by Interacting with the RILP-Dynein Complex.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Feb 1", "Efergan A, Azouz NP, Klein O, Noguchi K, Rothenberg ME, Fukuda M, Sagi-Eisenberg R", "protein_xref_pubmed", "26740112", "protein_xref_refseq", "NP_037149" ], [ "P43118-1", "Role of the prostanoid FP receptor in action potential generation and phenotypic transformation of NRK fibroblasts.", "Cellular signalling", "2008 Nov", "Almirza WH, Dernison MM, Peters PH, van Zoelen EJ, Theuvenet AP", "protein_xref_pubmed", "18703136", "protein_xref_refseq", "NP_037247" ], [ "Q6P7Q4-1", "Expression of glyoxalase-I is reduced in cirrhotic livers: A possible mechanism in the development of cirrhosis.", "PloS one", "2017", "Hollenbach M, Thonig A, Pohl S, Ripoll C, Michel M, Zipprich A", "protein_xref_pubmed", "28231326", "protein_xref_refseq", "NP_997477" ], [ "P63039-1", "Heat Shock Protein HSP60 in Left Ventricular Cardiomyocytes of Hypertensive Rats with and without Insulin-Dependent Diabetes Mellitus.", "Bulletin of experimental biology and medicine", "2020 Nov", "Blagonravov ML, Sklifasovskaya AP, Korshunova AY, Azova MM, Kurlaeva AO", "protein_xref_pubmed", "33219889", "protein_xref_refseq", "NP_071565" ], [ "Q9Z336-1", "MAP4 mechanism that stabilizes mitochondrial permeability transition in hypoxia: microtubule enhancement and DYNLT1 interaction with VDAC1.", "PloS one", "2011", "Fang YD, Xu X, Dang YM, Zhang YM, Zhang JP, Hu JY, Zhang Q, Dai X, Teng M, Zhang DX, Huang YS", "protein_xref_pubmed", "22164227", "protein_xref_refseq", "NP_112608" ], [ "Q8R2H2-1", "Role of miR-223-3p in pulmonary arterial hypertension via targeting ITGB3 in the ECM pathway.", "Cell proliferation", "2019 Mar", "Liu A, Liu Y, Li B, Yang M, Liu Y, Su J", "protein_xref_pubmed", "30507047", "protein_xref_refseq", "NP_714942" ], [ "Q63634-1", "The identification of neuropeptide Y receptor subtype involved in phenylpropanolamine-induced increase in oxidative stress and appetite suppression.", "Neuromolecular medicine", "2013 Mar", "Hsieh YS, Kuo MH, Chen PN, Kuo DY", "protein_xref_pubmed", "23179670", "protein_xref_refseq", "NP_037001" ], [ "P10868-1", "Mild guanidinoacetate increase under partial guanidinoacetate methyltransferase deficiency strongly affects brain cell development.", "Neurobiology of disease", "2015 Jul", "Hanna-El-Daher L, Beard E, Henry H, Tenenbaum L, Braissant O", "protein_xref_pubmed", "25896543", "protein_xref_refseq", "NP_036925" ], [ "P27615-1", "The NH(2)-terminal transmembrane and lumenal domains of LGP85 are needed for the formation of enlarged endosomes/lysosomes.", "Traffic (Copenhagen, Denmark)", "2005 Oct", "Kuronita T, Hatano T, Furuyama A, Hirota Y, Masuyama N, Saftig P, Himeno M, Fujita H, Tanaka Y", "protein_xref_pubmed", "16138903", "protein_xref_refseq", "NP_446453" ], [ "D3ZAW4-1", "Endocannabinoid biosynthesis proceeding through glycerophospho-N-acyl ethanolamine and a role for alpha/beta-hydrolase 4 in this pathway.", "The Journal of biological chemistry", "2006 Sep 8", "Simon GM, Cravatt BF", "protein_xref_pubmed", "16818490", "protein_xref_refseq", "NP_001102336" ], [ "Q6IRJ7-1", "Annexin A7 and SNAP23 interactions in alveolar type II cells and in vitro: a role for Ca(2+) and PKC.", "Biochimica et biophysica acta", "2012 Oct", "Gerelsaikhan T, Vasa PK, Chander A", "protein_xref_pubmed", "22713544", "protein_xref_refseq", "NP_569100" ], [ "P80203-1", "The role of Alk-1 and Alk-5 in the mechanosensing of chondrocytes.", "Cellular & molecular biology letters", "2014 Dec", "Sanz-Ramos P, Dotor J, Izal-Azcarate I", "protein_xref_pubmed", "25424912", "protein_xref_refseq", "NP_071886" ], [ "P97711-1", "Secreted miR-27a Induced by Cyclic Stretch Modulates the Proliferation of Endothelial Cells in Hypertension via GRK6.", "Scientific reports", "2017 Jan 20", "Wang L, Bao H, Wang KX, Zhang P, Yao QP, Chen XH, Huang K, Qi YX, Jiang ZL", "protein_xref_pubmed", "28106155", "protein_xref_refseq", "NP_001106184" ], [ "Q6XVN8-1", "Scanning Electron-Assisted Dielectric Microscopy Reveals Autophagosome Formation by LC3 and ATG12 in Cultured Mammalian Cells.", "International journal of molecular sciences", "2021 Feb 12", "Okada T, Ogura T", "protein_xref_pubmed", "33673233", "protein_xref_refseq", "NP_955794" ], [ "P97526-1", "The neurofibromatosis type I gene promotes autophagy via mTORC1 signalling pathway to enhance new bone formation after fracture.", "Journal of cellular and molecular medicine", "2020 Oct", "Tan Q, Wu JY, Liu YX, Liu K, Tang J, Ye WH, Zhu GH, Mei HB, Yang G", "protein_xref_pubmed", "32862562", "protein_xref_refseq", "NP_036741" ], [ "Q4KLN5-1", "Expression of the Ha-ras suppressor family member 5 gene in the maturing rat testis.", "Bioscience, biotechnology, and biochemistry", "2008 May", "Yamano Y, Asano A, Ohyama K, Ohta M, Nishio R, Morishima I", "protein_xref_pubmed", "18460797", "protein_xref_refseq", "NP_001034096" ], [ "P25095-1", "Characterization of Type 1 Angiotensin II Receptor Activation Induced Dual-Specificity MAPK Phosphatase Gene Expression Changes in Rat Vascular Smooth Muscle Cells.", "Cells", "2021 Dec 15", "Gem JB, Kovacs KB, Szalai L, Szakadati G, Porkolab E, Szalai B, Turu G, Toth AD, Szekeres M, Hunyady L, Balla A", "protein_xref_pubmed", "34944046", "protein_xref_refseq", "NP_112247" ], [ "Q08406-1", "The modulatory effects of luteolin on cyclic AMP/Ciliary neurotrophic factor signaling pathway in experimentally induced autoimmune encephalomyelitis.", "IUBMB life", "2019 Sep", "El-Deeb OS, Ghanem HB, El-Esawy RO, Sadek MT", "protein_xref_pubmed", "31185137", "protein_xref_refseq", "NP_001003929" ], [ "Q8CF82-1", "Cloning of human and rat ABCA5/Abca5 and detection of a human splice variant.", "Biochemical and biophysical research communications", "2003 Jan 10", "Petry F, Kotthaus A, Hirsch-Ernst KI", "protein_xref_pubmed", "12504089", "protein_xref_refseq", "NP_775429" ], [ "Q7TNI4-1", "IL-22RA2 associates with multiple sclerosis and macrophage effector mechanisms in experimental neuroinflammation.", "Journal of immunology (Baltimore, Md. : 1950)", "2010 Dec 1", "Beyeen AD, Adzemovic MZ, Ockinger J, Stridh P, Becanovic K, Laaksonen H, Lassmann H, Harris RA, Hillert J, Alfredsson L, Celius EG, Harbo HF, Kockum I, Jagodic M, Olsson T", "protein_xref_pubmed", "21041731", "protein_xref_refseq", "NP_001003404" ], [ "D3Z9H7-1", "Involvement of calcineurin/NFATc4 pathway in a single-prolonged stress-based rat model of post-traumatic stress disorder.", "Molecular biology reports", "2019 Dec", "Su Q, Liu M, Jiang M, Wang Y, Ma X, Li S, Xie J", "protein_xref_pubmed", "31486013", "protein_xref_refseq", "NP_001100734" ], [ "O35167-1", "Cholinesterases regulation in the absence of ColQ.", "Chemico-biological interactions", "2010 Sep 6", "Sigoillot SM, Bourgeois F, Legay C", "protein_xref_pubmed", "20153305", "protein_xref_refseq", "NP_062147" ], [ "Q6AYU3-1", "Cell and Context-Dependent Effects of the Heat Shock Protein DNAJB6 on Neuronal Survival.", "Molecular neurobiology", "2016 Oct", "Smith C, D'Mello SR", "protein_xref_pubmed", "26476842", "protein_xref_refseq", "NP_001013227" ], [ "P60517-1", "Interaction of Bcl-2 with the autophagy-related GABAA receptor-associated protein (GABARAP): biophysical characterization and functional implications.", "The Journal of biological chemistry", "2013 Dec 27", "Ma P, Schwarten M, Schneider L, Boeske A, Henke N, Lisak D, Weber S, Mohrluder J, Stoldt M, Strodel B, Methner A, Hoffmann S, Weiergraber OH, Willbold D", "protein_xref_pubmed", "24240096", "protein_xref_refseq", "NP_742033" ], [ "Q63475-1", "Knockdown of Ptprn-2 delays the onset of puberty in female rats.", "Theriogenology", "2021 Dec", "Kang T, Ye J, Qin P, Li H, Yao Z, Liu Y, Ling Y, Zhang Y, Yu T, Cao H, Li Y, Wang J, Fang F", "protein_xref_pubmed", "34607132", "protein_xref_refseq", "NP_113788" ], [ "Q0ZUP0-1", "Functional characterization of a conserved pair of NKR-P1 receptors expressed by NK cells and T lymphocytes in liver and gut.", "European journal of immunology", "2015 Feb", "Kveberg L, Sudworth A, Todros-Dawda I, Inngjerdingen M, Vaage JT", "protein_xref_pubmed", "25382546", "protein_xref_refseq", "NP_001078874" ], [ "Q6QA69-1", "Upregulation of Pnpla2 and Abhd5 and downregulation of G0s2 gene expression in mesenteric white adipose tissue as a potential reason for elevated concentration of circulating NEFA after removal of retroperitoneal, epididymal, and inguinal adipose tissue.", "Molecular and cellular biochemistry", "2016 Nov", "Dettlaff-Pokora A, Sledzinski T, Swierczynski J", "protein_xref_pubmed", "27590244", "protein_xref_refseq", "NP_997689" ], [ "P70616-1", "Down-regulation of Zac1 gene expression in rat white adipose tissue by androgens.", "The Journal of steroid biochemistry and molecular biology", "2014 Mar", "Mirowska A, Sledzinski T, Smolenski RT, Swierczynski J", "protein_xref_pubmed", "24316431", "protein_xref_refseq", "NP_036892" ], [ "Q7TP41-1", "Myocardial SSAT induction via AMPK signaling and its implication for ischemic injury.", "Biochemical and biophysical research communications", "2008 Feb 8", "Ryu JH, Cho YS, Chun YS, Park JW", "protein_xref_pubmed", "18062919", "protein_xref_refseq", "NP_001007668" ], [ "P04774-1", "Response of Voltage-Gated Sodium and Calcium Channels Subtypes on Dehydroepiandrosterone Treatment in Iron-Induced Epilepsy.", "Cellular and molecular neurobiology", "2021 Mar", "Prakash C, Mishra M, Kumar P, Kumar V, Sharma D", "protein_xref_pubmed", "32318899", "protein_xref_refseq", "NP_110502" ], [ "Q66H70-1", "Red nucleus IL-33 facilitates the early development of mononeuropathic pain in male rats by inducing TNF-alpha through activating ERK, p38 MAPK, and JAK2/STAT3.", "Journal of neuroinflammation", "2021 Jul 5", "Li HN, Yang QQ, Wang WT, Tian X, Feng F, Zhang ST, Xia YT, Wang JX, Zou YW, Wang JY, Zeng XY", "protein_xref_pubmed", "34225736", "protein_xref_refseq", "NP_001014188" ], [ "P23680-1", "Serum amyloid P component induces neuronal apoptosis and beta-amyloid immunoreactivity.", "Brain research", "2003 Oct 24", "Urbanyi Z, Laszlo L, Tomasi TB, Toth E, Mekes E, Sass M, Pazmany T", "protein_xref_pubmed", "14519527", "protein_xref_refseq", "NP_058866" ], [ "B0LPN4-1", "Contextual Fear Memory Formation and Destabilization Induce Hippocampal RyR2 Calcium Channel Upregulation.", "Neural plasticity", "2018", "More J, Casas MM, Sanchez G, Hidalgo C, Haeger P", "protein_xref_pubmed", "30123252", "protein_xref_refseq", "NP_001177972" ], [ "P62494-1", "Characterization of Heparan Sulfate Proteoglycan-positive Recycling Endosomes Isolated from Glioma Cells.", "Cancer genomics & proteomics", "2016 11-12", "Podyma-Inoue KA, Moriwaki T, Rajapakshe AR, Terasawa K, Hara-Yokoyama M", "protein_xref_pubmed", "27807067", "protein_xref_refseq", "NP_112414" ], [ "P49186-1", "Chrysophanol Protects Against Acute Heart Failure by Inhibiting JNK1/2 Pathway in Rats.", "Medical science monitor : international medical journal of experimental and clinical research", "2020 Oct 12", "Xie XJ, Li CQ", "protein_xref_pubmed", "33044948", "protein_xref_refseq", "NP_001257474" ], [ "Q920L6-1", "Modulation of palmitate-induced endoplasmic reticulum stress and apoptosis in pancreatic beta-cells by stearoyl-CoA desaturase and Elovl6.", "American journal of physiology. Endocrinology and metabolism", "2011 Apr", "Green CD, Olson LK", "protein_xref_pubmed", "21266672", "protein_xref_refseq", "NP_599210" ], [ "P00502-1", "GSTA3 regulates TGF-beta1-induced renal interstitial fibrosis in NRK-52E cells as a component of the PI3K-Keap1/Nrf2 pathway.", "The Journal of international medical research", "2019 Nov", "Xiao Y, Zhang Z, Fu Y, Shan H, Cui S, Wu J", "protein_xref_pubmed", "31617428", "protein_xref_refseq", "NP_001009920" ], [ "Q9WVI4-1", "Involvement of soluble guanylate cyclase alpha(1) and alpha(2), and SK(Ca) channels in NANC relaxation of mouse distal colon.", "European journal of pharmacology", "2008 Jul 28", "Dhaese I, Vanneste G, Sips P, Buys E, Brouckaert P, Lefebvre RA", "protein_xref_pubmed", "18572161", "protein_xref_refseq", "NP_076446" ], [ "Q9ES67-1", "Ethanol increases the activity of rat excitatory amino acid transporter type 4 expressed in Xenopus oocytes: role of protein kinase C and phosphatidylinositol 3-kinase.", "Alcoholism, clinical and experimental research", "2008 Feb", "Park HY, Kim JH, Zuo Z, Do SH", "protein_xref_pubmed", "18226120", "protein_xref_refseq", "NP_076472" ], [ "Q5HZY2-1", "Sar1 translocation onto the ER-membrane for vesicle budding has different pathways for promotion and suppression of ER-to-Golgi transport mediated through H89-sensitive kinase and ER-resident G protein.", "Molecular and cellular biochemistry", "2012 Jul", "Nakagawa H, Ishizaki M, Miyazaki S, Abe T, Nishimura K, Komori M, Matsuo S", "protein_xref_pubmed", "22484643", "protein_xref_refseq", "NP_001009622" ], [ "P48679-1", "Lamin A/C mutation associated with lipodystrophy influences adipogenic differentiation of stem cells through interaction with Notch signaling.", "Biochemistry and cell biology = Biochimie et biologie cellulaire", "2018 Jun", "Perepelina K, Dmitrieva R, Ignatieva E, Borodkina A, Kostareva A, Malashicheva A", "protein_xref_pubmed", "29040816", "protein_xref_refseq", "NP_001002016" ], [ "O35179-1", "Endophilin A2 protects H2O2-induced apoptosis by blockade of Bax translocation in rat basilar artery smooth muscle cells.", "Journal of molecular and cellular cardiology", "2016 Mar", "Liu Y, Gao M, Ma MM, Tang YB, Zhou JG, Wang GL, Du YH, Guan YY", "protein_xref_pubmed", "26854628", "protein_xref_refseq", "NP_446387" ], [ "P23363-1", "Effects of Ozone on Hippocampus BDNF and Fos Expressions in Rats with Chronic Compression of Dorsal Root Ganglia.", "BioMed research international", "2021", "Zhu L, Wang Y, Lin X, Zhao X, Fu ZJ", "protein_xref_pubmed", "34869766", "protein_xref_refseq", "NP_001257559" ], [ "P49001-1", "Inhibition of lysine-specific demethylase 1A suppresses neointimal hyperplasia by targeting bone morphogenetic protein 2 and mediating vascular smooth muscle cell phenotype.", "Cell proliferation", "2020 Jan", "Zhang X, Huang T, Zhai H, Peng W, Zhou Y, Li Q, Yang H", "protein_xref_pubmed", "31737960", "protein_xref_refseq", "NP_058874" ], [ "Q5BK77-1", "Crosstalk of hypothalamic chemerin, histamine, and AMPK in diet-and olanzapine-induced obesity in rats.", "Life sciences", "2021 Nov 1", "Samy DM, Mostafa DK, Abdelmonsif DA, Ismail CA, Hassaan PS", "protein_xref_pubmed", "34450172", "protein_xref_refseq", "NP_001013445" ], [ "P43219-1", "Expression of glucose-dependent insulinotropic polypeptide and its receptor in the rat major salivary glands.", "Acta histochemica", "2014 May", "Privatananupunt J, Watari I, Podyma-Inoue KA, Kubono M, Ono T", "protein_xref_pubmed", "24360021", "protein_xref_refseq", "NP_036846" ], [ "Q63429-1", "Differential ubiquitin-proteasome and autophagy signaling following rotator cuff tears and suprascapular nerve injury.", "Journal of orthopaedic research : official publication of the Orthopaedic Research Society", "2014 Jan", "Joshi SK, Kim HT, Feeley BT, Liu X", "protein_xref_pubmed", "24018537", "protein_xref_refseq", "NP_059010" ], [ "D4A4E8-1", "Suppression of tumor suppressor Tsc2 and DNA repair glycosylase Nth1 during spontaneous liver tumorigenesis in Long-Evans Cinnamon rats.", "Molecular and cellular biochemistry", "2010 May", "Sajankila SP, Manthena PV, Adhikari S, Choudhury S, Izumi K, Roy R", "protein_xref_pubmed", "20033472", "protein_xref_refseq", "NP_001099198" ], [ "Q811Q5-1", "Cyclic AMP signalling through PKA but not Epac is essential for neurturin-induced biphasic ERK1/2 activation and neurite outgrowths through GFRalpha2 isoforms.", "Cellular signalling", "2011 Nov", "Wan G, Zhou L, Lim Q', Wong YH, Too HP", "protein_xref_pubmed", "21723942", "protein_xref_refseq", "NP_445851" ], [ "P85834-1", "Identification of mitochondria translation elongation factor Tu as a contributor to oxidative damage of postburn myocardium.", "Journal of proteomics", "2012 Dec 21", "Zhang DX, Yan H, Hu JY, Zhang JP, Teng M, Tong DL, Xiang F, Zhang Q, Fang YD, Liang GP, Huang YS", "protein_xref_pubmed", "23041468", "protein_xref_refseq", "NP_001099765" ], [ "Q920H8-1", "Age-dependent expression of duodenal cytochrome b, divalent metal transporter 1, ferroportin 1, and hephaestin in the duodenum of rats.", "Journal of gastroenterology and hepatology", "2015 Mar", "Kong WN, Wu Q, Shen D, Zhao SE, Guo P, Duan XL, Chang YZ", "protein_xref_pubmed", "25318588", "protein_xref_refseq", "NP_579838" ], [ "Q5M831-1", "The schizophrenia susceptibility factor dysbindin and its associated complex sort cargoes from cell bodies to the synapse.", "Molecular biology of the cell", "2011 Dec", "Larimore J, Tornieri K, Ryder PV, Gokhale A, Zlatic SA, Craige B, Lee JD, Talbot K, Pare JF, Smith Y, Faundez V", "protein_xref_pubmed", "21998198", "protein_xref_refseq", "NP_001014178" ], [ "Q10758-1", "Keratin 8/18 regulation of cell stiffness-extracellular matrix interplay through modulation of Rho-mediated actin cytoskeleton dynamics.", "PloS one", "2012", "Bordeleau F, Myrand Lapierre ME, Sheng Y, Marceau N", "protein_xref_pubmed", "22685604", "protein_xref_refseq", "NP_955402" ], [ "Q1AAU6-1", "ASAP1 promotes tumor cell motility and invasiveness, stimulates metastasis formation in vivo, and correlates with poor survival in colorectal cancer patients.", "Oncogene", "2010 Apr 22", "Muller T, Stein U, Poletti A, Garzia L, Rothley M, Plaumann D, Thiele W, Bauer M, Galasso A, Schlag P, Pankratz M, Zollo M, Sleeman JP", "protein_xref_pubmed", "20154719", "protein_xref_refseq", "NP_001037710" ], [ "B0BNF6-1", "MITOL dysfunction causes dwarfism with anterior pituitary hypoplasia.", "Journal of biochemistry", "2020 Sep 1", "Matsuno K, Nagashima S, Shiiba I, Taniwaka K, Takeda K, Tokuyama T, Ito N, Matsushita N, Fukuda T, Ishido S, Inatome R, Yanagi S", "protein_xref_pubmed", "32302394", "protein_xref_refseq", "NP_001099842" ], [ "P39947-1", "Cyclin C and cyclin dependent kinases 1, 2 and 3 in thrombin-induced neuronal cell cycle progression and apoptosis.", "Neuroscience letters", "2009 Feb 6", "Rao HV, Thirumangalakudi L, Grammas P", "protein_xref_pubmed", "19103257", "protein_xref_refseq", "NP_001093942" ], [ "Q62840-1", "Ameloblastin and amelogenin share a common secretory pathway and are co-secreted during enamel formation.", "Matrix biology : journal of the International Society for Matrix Biology", "2008 May", "Zalzal SF, Smith CE, Nanci A", "protein_xref_pubmed", "18281204", "protein_xref_refseq", "NP_037032" ], [ "Q07116-1", "Sulphite oxidase gene expression in human brain and in other human and rat tissues.", "Biochemical and biophysical research communications", "2003 Jun 6", "Woo WH, Yang H, Wong KP, Halliwell B", "protein_xref_pubmed", "12763039", "protein_xref_refseq", "NP_112389" ], [ "P26453-1", "Inflammation suppression by dexamethasone via inhibition of CD147-mediated NF-kappaB pathway in collagen-induced arthritis rats.", "Molecular and cellular biochemistry", "2020 Oct", "Wang Q, Xu B, Fan K, Wu J, Wang T", "protein_xref_pubmed", "32594339", "protein_xref_refseq", "NP_001103352" ], [ "Q6IG12-1", "Ductular reaction, cytokeratin 7 positivity, and gamma-glutamyl transferase in multistage hepatocarcinogenesis in rats.", "Protoplasma", "2017 Mar", "Moreira AJ, Rodrigues GR, Bona S, Fratta LX, Weber GR, Picada JN, Dos Santos JL, Cerski CT, Marroni CA, Marroni NP", "protein_xref_pubmed", "27525410", "protein_xref_refseq", "NP_001041335" ], [ "Q6P6T1-1", "Increased expression and secretion of r-Gsp protein, rat counterpart of complement C1s precursor, during cyclic AMP-induced differentiation in rat C6 glioma cells.", "Brain research. Molecular brain research", "2002 Oct 15", "Nakagawa M, Nakashima S, Banno Y, Yamada J, Sawada M, Yoshimura Si, Kaku Y, Iwama T, Shinoda J, Sakai N", "protein_xref_pubmed", "12393260", "protein_xref_refseq", "NP_620255" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2020-04-10T12:05:22.894637\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/compiled/rat_protein_blacklisted_pmids_uniprotkb.csv\n Name: rat_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_function_refseq.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5661\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"13463\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1253\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"3294\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"13405\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13463\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"5827\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_citations_refseq.csv" }