{ "bcoid": "GLY_000261", "title": "Rat UniProtKB Xref PANTHER", "description": "The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB49-1...", "protein_xref..." ], [ "D3ZB49-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "D3ZB49-1", "protein_xref_panther", "PTHR15192:SF4", "PTHR15192:SF4" ], [ "D3ZB49-1", "protein_xref_panther", "PTHR15192", "PTHR15192" ], [ "Q99372-1", "protein_xref_panther", "PTHR24018", "PTHR24018" ], [ "Q07969-1", "protein_xref_panther", "PTHR11923", "PTHR11923" ], [ "Q07969-1", "protein_xref_panther", "PTHR11923:SF12", "PTHR11923:SF12" ], [ "Q9QYG8-1", "protein_xref_panther", "PTHR10285:SF131", "PTHR10285:SF131" ], [ "A0A096MJY1-1", "protein_xref_panther", "PTHR10822", "PTHR10822" ], [ "A0A096MJY1-1", "protein_xref_panther", "PTHR10822:SF31", "PTHR10822:SF31" ], [ "P56558-1", "protein_xref_panther", "PTHR44366", "PTHR44366" ], [ "A0A096MJY2-1", "protein_xref_panther", "PTHR10264:SF49", "PTHR10264:SF49" ], [ "A0A096MJY2-1", "protein_xref_panther", "PTHR10264", "PTHR10264" ], [ "A0A0G2K4P4-1", "protein_xref_panther", "PTHR14845:SF5", "PTHR14845:SF5" ], [ "Q63358-1", "protein_xref_panther", "PTHR46184:SF2", "PTHR46184:SF2" ], [ "O35152-1", "protein_xref_panther", "PTHR12791", "PTHR12791" ], [ "O35158-1", "protein_xref_panther", "PTHR44170:SF1", "PTHR44170:SF1" ], [ "P02761-1", "protein_xref_panther", "PTHR11430", "PTHR11430" ], [ "P02767-1", "protein_xref_panther", "PTHR10395", "PTHR10395" ], [ "P02767-1", "protein_xref_panther", "PTHR10395:SF12", "PTHR10395:SF12" ], [ "D4A4W8-1", "protein_xref_panther", "PTHR11267", "PTHR11267" ], [ "D4A4W1-1", "protein_xref_panther", "PTHR28607", "PTHR28607" ], [ "F7EN52-1", "protein_xref_panther", "PTHR24293", "PTHR24293" ], [ "D4A4W5-1", "protein_xref_panther", "PTHR24092", "PTHR24092" ], [ "D4A4W5-1", "protein_xref_panther", "PTHR24092:SF79", "PTHR24092:SF79" ], [ "D4A4W7-1", "protein_xref_panther", "PTHR22910", "PTHR22910" ], [ "Q4L0E8-1", "protein_xref_panther", "PTHR10845:SF155", "PTHR10845:SF155" ], [ "G3V6I6-1", "protein_xref_panther", "PTHR20855", "PTHR20855" ], [ "P12749-1", "protein_xref_panther", "PTHR11143", "PTHR11143" ], [ "O08812-1", "protein_xref_panther", "PTHR43243:SF20", "PTHR43243:SF20" ], [ "P39020-1", "protein_xref_panther", "PTHR24328", "PTHR24328" ], [ "P11980-1", "protein_xref_panther", "PTHR11817", "PTHR11817" ], [ "A0A0G2K0T8-1", "protein_xref_panther", "PTHR34994", "PTHR34994" ], [ "Q6P6Q9-1", "protein_xref_panther", "PTHR12294", "PTHR12294" ], [ "Q63544-1", "protein_xref_panther", "PTHR13820", "PTHR13820" ], [ "D3ZVR6-1", "protein_xref_panther", "PTHR46677", "PTHR46677" ], [ "P01237-1", "protein_xref_panther", "PTHR11417", "PTHR11417" ], [ "P01230-1", "protein_xref_panther", "PTHR11515", "PTHR11515" ], [ "Q6MG12-1", "protein_xref_panther", "PTHR31094", "PTHR31094" ], [ "P09005-1", "protein_xref_panther", "PTHR11461", "PTHR11461" ], [ "M0RB72-1", "protein_xref_panther", "PTHR14581", "PTHR14581" ], [ "P09006-1", "protein_xref_panther", "PTHR11461", "PTHR11461" ], [ "D4A781-1", "protein_xref_panther", "PTHR10527", "PTHR10527" ], [ "Q9JHY1-1", "protein_xref_panther", "PTHR45113", "PTHR45113" ], [ "Q9JHY2-1", "protein_xref_panther", "PTHR11153", "PTHR11153" ], [ "P33568-1", "protein_xref_panther", "PTHR13742", "PTHR13742" ], [ "P31646-1", "protein_xref_panther", "PTHR11616", "PTHR11616" ], [ "P08699-1", "protein_xref_panther", "PTHR11346:SF26", "PTHR11346:SF26" ], [ "P08699-1", "protein_xref_panther", "PTHR11346", "PTHR11346" ], [ "P56558-1", "protein_xref_panther", "PTHR44366", "PTHR44366" ], [ "P08011-1", "protein_xref_panther", "PTHR10689", "PTHR10689" ], [ "Q8CJ58-1", "protein_xref_panther", "PTHR31548", "PTHR31548" ], [ "Q99JD2-1", "protein_xref_panther", "PTHR19960", "PTHR19960" ], [ "Q7TP40-1", "protein_xref_panther", "PTHR16523", "PTHR16523" ], [ "P18508-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "P20420-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "A0A0G2JTB2-1", "protein_xref_panther", "PTHR43651", "PTHR43651" ], [ "Q02294-1", "protein_xref_panther", "PTHR10037:SF289", "PTHR10037:SF289" ], [ "Q02294-1", "protein_xref_panther", "PTHR10037", "PTHR10037" ], [ "M0R8G5-1", "protein_xref_panther", "PTHR39224", "PTHR39224" ], [ "Q02293-1", "protein_xref_panther", "PTHR11774:SF6", "PTHR11774:SF6" ], [ "D3ZGR6-1", "protein_xref_panther", "PTHR34523", "PTHR34523" ], [ "D3ZGR7-1", "protein_xref_panther", "PTHR34753", "PTHR34753" ], [ "Q9R1N3-1", "protein_xref_panther", "PTHR11453", "PTHR11453" ], [ "D3ZIY7-1", "protein_xref_panther", "PTHR13718", "PTHR13718" ], [ "D3ZSP1-1", "protein_xref_panther", "PTHR11193", "PTHR11193" ], [ "P48550-1", "protein_xref_panther", "PTHR11767:SF19", "PTHR11767:SF19" ], [ "P48550-1", "protein_xref_panther", "PTHR11767", "PTHR11767" ], [ "D3ZFP4-1", "protein_xref_panther", "PTHR11630", "PTHR11630" ], [ "D3ZFP7-1", "protein_xref_panther", "PTHR21386", "PTHR21386" ], [ "D3ZFP6-1", "protein_xref_panther", "PTHR21556", "PTHR21556" ], [ "D3ZYL3-1", "protein_xref_panther", "PTHR24061", "PTHR24061" ], [ "Q6B4M5-1", "protein_xref_panther", "PTHR14102:SF9", "PTHR14102:SF9" ], [ "D4A131-1", "protein_xref_panther", "PTHR10746", "PTHR10746" ], [ "D4A133-1", "protein_xref_panther", "PTHR43607", "PTHR43607" ], [ "D4A138-1", "protein_xref_panther", "PTHR12887", "PTHR12887" ], [ "D3ZCS5-1", "protein_xref_panther", "PTHR21077", "PTHR21077" ], [ "D3ZHE3-1", "protein_xref_panther", "PTHR47086", "PTHR47086" ], [ "D3ZCS1-1", "protein_xref_panther", "PTHR10845:SF32", "PTHR10845:SF32" ], [ "D3ZHE6-1", "protein_xref_panther", "PTHR11127", "PTHR11127" ], [ "D3ZCS9-1", "protein_xref_panther", "PTHR10395", "PTHR10395" ], [ "A0A0G2KAH3-1", "protein_xref_panther", "PTHR11267", "PTHR11267" ], [ "D3ZUF1-1", "protein_xref_panther", "PTHR31171", "PTHR31171" ], [ "D3ZXJ0-1", "protein_xref_panther", "PTHR10201:SF21", "PTHR10201:SF21" ], [ "Q62826-1", "protein_xref_panther", "PTHR23003:SF6", "PTHR23003:SF6" ], [ "F1M0R6-1", "protein_xref_panther", "PTHR14449", "PTHR14449" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PANTHER\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.988053\n\nModified on\n - 2022-01-19T13:43:59.401573\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_panther.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_panther.csv\n Name: rat_protein_xref_panther.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10175\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6901\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"6901\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_xref_panther.csv" }