{
    "bcoid": "GLY_000255",
    "title": "Rat Protein Isoform sequences (UniProtKB)",
    "description": "The Rat Protein Isoform sequences (UniProtKB) dataset contains rat [taxid:10116] protein fasta sequences ...",
    "filename": "rat_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "All Protein Sequences",
        "file_type": "fasta",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|D3ZB44-1|D3ZB44_RAT Isoform 1 of Zinc finger protein 324 OS=Rattus norvegicus OX=10116 GN=Zfp324 PE=4 SV=1 CANONICAL=D3ZB44-1\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIGPSVSRPRVIIQLQRGEEPWVPNRTIAGPGRGTHRRSSLGSNYSARDRHV\nSGASPGATCDRPVRISTSLLPPAGAYPDAKILEGHQSACPSLQKKPTGVSVIYWEQLLLG\nSSSSEATVSLRLTSPVGVPENGSSRVKAFSDLLAPGKQLRVAEQQKPEMQLNPGRTFQSI\nPDLHEAEEGHGISGACHESQGDPSVPEAPIWDELGEALQAGPGLFSGDKPFECRACNKVF\nVKSSDLLKHLRTHTGERPYECAQCGKAFSQTSHLTQHQRIHSGETPYVCMVCSKAFRHSS\nSLVRHQRIHTVEKTFHCNECGKAFSHGSNLSQHRKIHAGGRPYACAQCGRRFCRNSHLIQ\nHERTHTGEKPYACSLCGAAFSQGSSLFKHQRVHTGEKPFSCPQCGRAFSHSSNLTQHQLL\nHTGERPFRCGDCGKAFAKGAVLLSHRRIHTGEKPFVCTQCGRAFRERPALFHHQRIHTGE\nKALRRPRGNMHSQIGSLGVSLDGTHPKATLDPPAVPNIAEA\n\n\n>tr|D3ZB41-1|D3ZB41_RAT Isoform 1 of Zinc finger protein 78 OS=Rattus norvegicus OX=10116 GN=Zfp78 PE=4 SV=2 CANONICAL=D3ZXJ3-1\nMTVELMKAMLQDAVTFKDVAIDFSQEEWEWLNPAQRSLYRNVVLENYRNLVSVGGESVQK\nTQELSLRQLAFDAVSVENIASLGCESPTSGKKQKCKDLFDRQKMSQEIFNLKETVTHKGT\nHTKEIGYKHTESFKSVHLDSVEENIYSHKTNKKSFSKNPKVRKYKKIWAGKNIFKCNECE\nKTFTHSSSVTVHQRIHTGEKPYKCTVCGKAFKQSHHLAQHHTTHTHEKLFECKECNKAFS\nQNSYLIVHQRIHTGEKPYKCKECTKSFRQPAHLAQHQRIHTGEKPYKCDICGKAFSHSMS\nLTGHQRVHSGEKPYTCKECGKAFRQSIHLVVHSRIHTGEKPYECKECGKAFRESSQLASH\nQRNHTGEKPFECKQCGKFFKRSTYLARHQKIHTGEKPYECNECGKTFTHTAYLIRHKRVH\nTGEKPYKCSECGKAFGDGSSRAQHQRLHSGERPYACERCGRAFRTKSSFNCHQSCHTGKK\nP\n\n\n>tr|Q5BK97-1|NEUR2_RAT Isoform 1 of Sialidase-2 OS=Rattus norvegicus OX=10116 GN=Neu2 PE=1 SV=1 CANONICAL=Q64627-1\nMETCPVLQKETLFHTEVYAYRIPALLYLKKQKTLLAFAEKRASRTDEHAELIVLRRGSYN\nGATNHVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEQHQLQTRVN\nVTRLCRVTSTDYGMNWSPVQDLTETTIGSTHQDWATFAVGPGHCLQLRNRAGSLLVPAYA\nYQKLHPVHKPTPFAFCFISLDHGHTWELGNFVSENSLECQVAEVGTGAHRVVYLNARSFI\nGARVQAQSPNDGLDFQDNQVVSKLVEPPHGCHGSVVAFHSPTSKPDALDMWLLYTHPTDS\nRNRTNLGVYLNQTPLDPTAWSEPTLLATGTCAYSDLQNMGRGPDGSPQFGCLYESGNYDE\nIIFLMFTLKQAFPTVHGAQ\n\n\n>sp|Q64627-1|NEUR2_RAT Isoform 1 of Sialidase-2 OS=Rattus norvegicus OX=10116 GN=Neu2 PE=1 SV=1 CANONICAL=Q64627-1\nMETCPVLQKETLFHTEVYAYRIPALLYLKKQKTLLAFAEKRASRTDEHAELIVLRRGSYN\nGATNHVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEQHQLQTRVN\nVTRLCRVTSTDYGMNWSPVQDLTETTIGSTHQDWATFAVGPGHCLQLRNRAGSLLVPAYA\nYRKLHPVHKPTPFAFCFISLDHGHTWELGNFVSENSLECQVAEVGTGAHRVVYLNARSFI\nGARVQAQSPNDGLDFQDNQVVSKLVEPPHGCHGSVVAFHSPTSKPDCLRHVAAYTHPTDS\nRNRTNLGVYLNQTPLDPTAWSEPTLLATGTCAYSDLQIWGLGPDGSPQFGCLYESGNYDE\nIIFLMFTLKQAFPTVHGAQ\n\n\n>tr|D3ZB48-1|D3ZB48_RAT Isoform 1 of Hook microtubule-tethering protein 1 OS=Rattus norvegicus OX=10116 GN=Hook1 PE=1 SV=1 CANONICAL=D3ZB48-1\nMEDPQPLPQPELPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWL\nSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITESSDPVELGRL\nLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVSSPASDAVGELEQQL\nKRALEELQEALAEKEELKQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSFDDPN\nTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETR\nALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVSLEEE\nLKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQR\nDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQ\nQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGSKSEG\nESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELEAALQKKDEDMK\nAMEERYKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKDRRIEILESECKVAKFRDY\nEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQQRHITSTRRNLSV\nKVPAAASD\n\n\n>tr|A0A0G2JVG0-1|A0A0G2JVG0_RAT Isoform 1 of Regulator of telomere elongation helicase 1 OS=Rattus norvegicus OX=10116 GN=Rtel1 PE=3 SV=1 CANONICAL=Q5RJZ1-1\nMPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR\nEHLRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLT\nQVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEE\nKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNI\nDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFI\nIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQ\nTKGCILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHF\nYKVHIHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSG\nTLAPLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSS\nLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSE\nVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKM\nQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADA\nRAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSVSEGEAAVKEATL\nSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRPMGLLAALE\nYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFM\nVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH\nKQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTARRRELESKLTLSEGADRQLDPGEHLN\nQGWPHLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAY\nKQDDDLDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLE\nLPCPRDESTTVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPP\nRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVNRKQ\nSIAQVIWPKPQ\n\n\n>tr|A0A0G2JVG2-1|A0A0G2JVG2_RAT Isoform 1 of Valine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Vars PE=1 SV=1 CANONICAL=Q04462-1\nMSILYVSPHPDAFPSLRALIAARYGEAGDGPGWGGPHPRICLQPPPSSRTPFPPPRLPAL\nEQGPGGLWVWGAPAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELTPAACGATLPALG\nLRGPGQDPQAALGALGKALNPLEEWLRLHTYLAGDAPTLADLAAVTALLLPFRYVLDPSA\nRRIWGNVT\n\n\n>tr|A0A0G2JVG3-1|A0A0G2JVG3_RAT Isoform 1 of Pyruvate kinase OS=Rattus norvegicus OX=10116 GN=Pkm PE=1 SV=1 CANONICAL=P11980-1\nMPKPDSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTIGPASRSVEM\nLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPILYRPVAVALDTKGPEIR\nTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGL\nISLQVKEKGADYLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMV\nFASFIRKAADVHEVRKVLGEKEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTR\nAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLA\nPITSDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQ\nAHLYRGIFPVLCKDAVLDAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPGSGFT\nNTMRVVPVP\n\n\n>tr|A0A0G2JVG4-1|A0A0G2JVG4_RAT Isoform 1 of Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus OX=10116 GN=Pecr PE=1 SV=1 CANONICAL=Q9WVK3-1\nMGSWKSGQSYLAAGLLQNQVAVVTGGATGIGKAISRELLHLGCNVVIASRKLDRLTAAVD\nELRASQPPSSSTQVTAIQCNIRKEEEVNNLVKSTLAKYGKINFLVNNAGGQFMAPAEDIT\nAKGWQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLNNGFPTAAHSGAARAGVYN\nLTKTMALTWASSGVRINCVAPGTIYSQTAVDNYGELGQTMFEMAFENIPAKRVGLPEELS\nPLVCFLLSPAASFITWTGSHQCETAGQALYTRNFTIPDHDNWPVGAGDSSFIKKVKESLK\nKQARL\n\n\n</pre>"
    },
    "readme": "Name\n   - Rat Protein Isoform sequences (UniProtKB)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2019-09-06T14:06:38.982193\n\nModified on\n   - 2022-01-19T13:28:03.962889\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Isoform sequences (UniProtKB) dataset contains rat [taxid:10116] protein fasta sequences for the rat isoform accessions from the UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n   - protein alternative name\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all rat isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format. \n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_allsequences.fasta\n      Name: rat_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"31508\"",
    "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_allsequences.fasta"
}