{ "bcoid": "GLY_000241", "title": "Rat Protein Information (UniProtKB)", "description": "The Rat Protein Information dataset contains rat [taxid:10116] UniProtKB canonical accessions with their ...", "filename": "rat_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A0G2JSI4-1...", "A0A0G2JSI4_R..." ], [ "Q63538-1...", "MK12_RAT..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "A0A0G2JSI4-1", "A0A0G2JSI4_RAT", "99387", "903" ], [ "Q63538-1", "MK12_RAT", "41985", "367" ], [ "F1LYV1-1", "F1LYV1_RAT", "17281", "151" ], [ "Q6AXN8-1", "Q6AXN8_RAT", "62972", "554" ], [ "D3ZLH5-1", "PLXB3_RAT", "208487", "1902" ], [ "D4A4J0-1", "D4A4J0_RAT", "119866", "1047" ], [ "Q6MFX2-1", "Q6MFX2_RAT", "34207", "312" ], [ "Q66H41-1", "Q66H41_RAT", "45011", "387" ], [ "Q9Z137-1", "B3GA2_RAT", "37220", "324" ], [ "P17431-1", "TISB_RAT", "36399", "338" ], [ "O54842-1", "NUPR1_RAT", "8955", "80" ], [ "Q7TPB7-1", "Q7TPB7_RAT", "19196", "176" ], [ "B0K010-1", "B0K010_RAT", "14092", "123" ], [ "Q63086-1", "CTF1_RAT", "21439", "203" ], [ "Q6BBI8-1", "UFC1_RAT", "19492", "167" ], [ "D3ZFM0-1", "D3ZFM0_RAT", "23780", "230" ], [ "P20766-1", "LAC1_RAT", "11565", "104" ], [ "Q6P7D7-1", "Q6P7D7_RAT", "53409", "490" ], [ "D4A7T1-1", "D4A7T1_RAT", "39148", "334" ], [ "F1M8C2-1", "F1M8C2_RAT", "21485", "190" ], [ "Q4V8G8-1", "TEKT3_RAT", "56416", "490" ], [ "P46153-1", "GATA6_RAT", "59168", "587" ], [ "B2RZ82-1", "B2RZ82_RAT", "37694", "342" ], [ "F1MAS1-1", "F1MAS1_RAT", "45729", "431" ], [ "F1MAF8-1", "F1MAF8_RAT", "220347", "1977" ], [ "D3ZH27-1", "D3ZH27_RAT", "16988", "147" ], [ "D3ZTY9-1", "D3ZTY9_RAT", "94447", "855" ], [ "F1LZR6-1", "F1LZR6_RAT", "94324", "827" ], [ "Q6TUF0-1", "Q6TUF0_RAT", "31768", "289" ], [ "B3EY84-1", "B3EY84_RAT", "20325", "176" ], [ "D3ZGX2-1", "D3ZGX2_RAT", "21613", "185" ], [ "P0DP76-1", "ELA_RAT", "6823", "54" ], [ "D3ZXT7-1", "D3ZXT7_RAT", "37377", "339" ], [ "F7F4B1-1", "F7F4B1_RAT", "48106", "419" ], [ "D3ZP49-1", "D3ZP49_RAT", "7124", "64" ], [ "A0A0G2JWU0-1", "A0A0G2JWU0_RAT", "63623", "550" ], [ "D3ZEB4-1", "D3ZEB4_RAT", "29060", "266" ], [ "Q68G30-1", "KLC3_RAT", "55655", "505" ], [ "D3ZXA6-1", "D3ZXA6_RAT", "98819", "878" ], [ "A0A0G2JTX2-1", "A0A0G2JTX2_RAT", "19524", "178" ], [ "D4A7F5-1", "D4A7F5_RAT", "69503", "607" ], [ "F1M661-1", "F1M661_RAT", "75982", "685" ], [ "M0RAB1-1", "M0RAB1_RAT", "15286", "132" ], [ "D3ZMU0-1", "D3ZMU0_RAT", "40334", "367" ], [ "Q5U4F3-1", "F107B_RAT", "15586", "131" ], [ "Q925D2-1", "Q925D2_RAT", "17661", "158" ], [ "F1M9W4-1", "F1M9W4_RAT", "88057", "807" ], [ "A0A096MJC8-1", "A0A096MJC8_RAT", "59947", "561" ], [ "A1L1J7-1", "A1L1J7_RAT", "37570", "337" ], [ "D3Z960-1", "D3Z960_RAT", "12348", "117" ], [ "M0RCH4-1", "M0RCH4_RAT", "15444", "139" ], [ "F1M6U2-1", "F1M6U2_RAT", "34129", "301" ], [ "Q5PPP4-1", "MAGH1_RAT", "24289", "218" ], [ "B5DF21-1", "SMAG1_RAT", "67150", "610" ], [ "A0A0G2K9P3-1", "A0A0G2K9P3_RAT", "23615", "213" ], [ "P31246-1", "HXA2_RAT", "40827", "372" ], [ "D3ZUI0-1", "D3ZUI0_RAT", "62890", "572" ], [ "A0A0G2K2M5-1", "A0A0G2K2M5_RAT", "29412", "253" ], [ "Q5RJT3-1", "Q5RJT3_RAT", "38761", "340" ], [ "D4A6I7-1", "D4A6I7_RAT", "13378", "123" ], [ "Q00960-1", "NMDE2_RAT", "166071", "1482" ], [ "D4ADJ0-1", "D4ADJ0_RAT", "98010", "850" ], [ "D3ZCR1-1", "D3ZCR1_RAT", "39659", "355" ], [ "D3ZMA8-1", "D3ZMA8_RAT", "35227", "315" ], [ "F7F3V7-1", "F7F3V7_RAT", "39549", "348" ], [ "M0RA26-1", "M0RA26_RAT", "9516", "84" ], [ "M0RBD4-1", "M0RBD4_RAT", "22650", "201" ], [ "F1M163-1", "F1M163_RAT", "50996", "465" ], [ "D3ZFB6-1", "PRRT2_RAT", "35821", "344" ], [ "Q5BJT1-1", "AN34A_RAT", "52456", "495" ], [ "Q3ZB89-1", "Q3ZB89_RAT", "6338", "51" ], [ "A0A0G2JWK9-1", "A0A0G2JWK9_RAT", "15631", "131" ], [ "D3ZKN0-1", "D3ZKN0_RAT", "58311", "538" ], [ "D3ZBE5-1", "NEK7_RAT", "34529", "302" ], [ "P04474-1", "PRP3_RAT", "21403", "206" ], [ "Q5RJN9-1", "CLBA1_RAT", "34736", "321" ], [ "D3ZMD3-1", "D3ZMD3_RAT", "134394", "1199" ], [ "Q4KM45-1", "CT027_RAT", "19456", "174" ], [ "P13221-1", "AATC_RAT", "46429", "413" ], [ "Q8K3E9-1", "HOMEZ_RAT", "57677", "513" ], [ "D3ZEI2-1", "D3ZEI2_RAT", "71635", "611" ], [ "M0R6S5-1", "M0R6S5_RAT", "100187", "886" ], [ "Q5HZX7-1", "LDAH_RAT", "36881", "325" ], [ "P19225-1", "CP270_RAT", "56157", "489" ] ] }, "readme": "Name\n - Rat Protein Information (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.968442\n\nModified on\n - 2022-01-19T12:49:40.567555\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Information dataset contains rat [taxid:10116] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts dataset in a csv format. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_info_uniprotkb.csv\n Name: rat_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21589\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"21589\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"19187\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2076\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_info_uniprotkb.csv" }