{ "bcoid": "GLY_000116", "title": "Mouse UniProtKB Xref OrthoDB", "description": "The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Orthodb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_orthodb", "641127at2759", "" ], [ "Q8BH27-1", "protein_xref_orthodb", "619649at2759", "" ], [ "Q8BH26-1", "protein_xref_orthodb", "1528152at2759", "" ], [ "B2RXV4-1", "protein_xref_orthodb", "702737at2759", "" ], [ "E9Q3P4-1", "protein_xref_orthodb", "205405at2759", "" ], [ "A5H0M4-1", "protein_xref_orthodb", "1514637at2759", "" ], [ "P03899-1", "protein_xref_orthodb", "1605459at2759", "" ], [ "O35153-1", "protein_xref_orthodb", "1536545at2759", "" ], [ "P03893-1", "protein_xref_orthodb", "1153818at2759", "" ], [ "Q9QYH9-1", "protein_xref_orthodb", "1371007at2759", "" ], [ "P52479-1", "protein_xref_orthodb", "1078977at2759", "" ], [ "P02762-1", "protein_xref_orthodb", "1107052at2759", "" ], [ "Q9QYH6-1", "protein_xref_orthodb", "1195799at2759", "" ], [ "Q08AU9-1", "protein_xref_orthodb", "1248778at2759", "" ], [ "Q08AU7-1", "protein_xref_orthodb", "1056604at2759", "" ], [ "Q5EBH1-1", "protein_xref_orthodb", "1120975at2759", "" ], [ "Q80YU0-1", "protein_xref_orthodb", "580247at2759", "" ], [ "Q5SRT8-1", "protein_xref_orthodb", "993640at2759", "" ], [ "P70414-1", "protein_xref_orthodb", "490546at2759", "" ], [ "A0A0U1RNG7-1", "protein_xref_orthodb", "1377258at2759", "" ], [ "P70419-1", "protein_xref_orthodb", "606683at2759", "" ], [ "Q9EP78-1", "protein_xref_orthodb", "1246608at2759", "" ], [ "Q9EP79-1", "protein_xref_orthodb", "1390012at2759", "" ], [ "Q3URK3-1", "protein_xref_orthodb", "29059at2759", "" ], [ "Q9EP72-1", "protein_xref_orthodb", "1348328at2759", "" ], [ "Q9EP73-1", "protein_xref_orthodb", "892262at2759", "" ], [ "Q9EP71-1", "protein_xref_orthodb", "876605at2759", "" ], [ "Q9EP75-1", "protein_xref_orthodb", "1247045at2759", "" ], [ "Q8VF62-1", "protein_xref_orthodb", "1048648at2759", "" ], [ "Q3UHI0-1", "protein_xref_orthodb", "1263802at2759", "" ], [ "S4R213-1", "protein_xref_orthodb", "700520at2759", "" ], [ "Q91VV4-1", "protein_xref_orthodb", "138384at2759", "" ], [ "P53702-1", "protein_xref_orthodb", "1282808at2759", "" ], [ "O08911-1", "protein_xref_orthodb", "683132at2759", "" ], [ "Q80WC9-1", "protein_xref_orthodb", "881306at2759", "" ], [ "O08912-1", "protein_xref_orthodb", "606683at2759", "" ], [ "O08915-1", "protein_xref_orthodb", "1278789at2759", "" ], [ "O08914-1", "protein_xref_orthodb", "852596at2759", "" ], [ "O08917-1", "protein_xref_orthodb", "812555at2759", "" ], [ "Q80WC3-1", "protein_xref_orthodb", "11077at2759", "" ], [ "O08918-1", "protein_xref_orthodb", "1015714at2759", "" ], [ "Q80WC1-1", "protein_xref_orthodb", "469344at2759", "" ], [ "Q9JHY4-1", "protein_xref_orthodb", "1571744at2759", "" ], [ "Q8BYW1-1", "protein_xref_orthodb", "917149at2759", "" ], [ "G5E8Q8-1", "protein_xref_orthodb", "611778at2759", "" ], [ "Q66GT5-1", "protein_xref_orthodb", "1386941at2759", "" ], [ "P50429-1", "protein_xref_orthodb", "515367at2759", "" ], [ "Q8BTJ4-1", "protein_xref_orthodb", "999163at2759", "" ], [ "P59708-1", "protein_xref_orthodb", "1603846at2759", "" ], [ "P04760-1", "protein_xref_orthodb", "588360at2759", "" ], [ "P59808-1", "protein_xref_orthodb", "949260at2759", "" ], [ "F8VQK3-1", "protein_xref_orthodb", "531253at2759", "" ], [ "Q9R1N9-1", "protein_xref_orthodb", "669310at2759", "" ], [ "A2AT96-1", "protein_xref_orthodb", "996660at2759", "" ], [ "Q3V3Q4-1", "protein_xref_orthodb", "1577634at2759", "" ], [ "Q3V3Q7-1", "protein_xref_orthodb", "291515at2759", "" ], [ "Q9D516-1", "protein_xref_orthodb", "1583452at2759", "" ], [ "Q9D517-1", "protein_xref_orthodb", "959325at2759", "" ], [ "Q9D513-1", "protein_xref_orthodb", "615895at2759", "" ], [ "Q9D518-1", "protein_xref_orthodb", "1153514at2759", "" ], [ "Q9D519-1", "protein_xref_orthodb", "1449736at2759", "" ], [ "Q8K2M0-1", "protein_xref_orthodb", "1557122at2759", "" ], [ "Q8K2M3-1", "protein_xref_orthodb", "1590454at2759", "" ], [ "P21661-1", "protein_xref_orthodb", "308083at2759", "" ], [ "P58462-1", "protein_xref_orthodb", "836427at2759", "" ], [ "A2RSY6-1", "protein_xref_orthodb", "1414511at2759", "" ], [ "Q8CB67-1", "protein_xref_orthodb", "993497at2759", "" ], [ "Q8VC03-1", "protein_xref_orthodb", "271572at2759", "" ], [ "Q8VC04-1", "protein_xref_orthodb", "1175832at2759", "" ], [ "P22727-1", "protein_xref_orthodb", "624528at2759", "" ], [ "P59672-1", "protein_xref_orthodb", "549581at2759", "" ], [ "Q8BGW1-1", "protein_xref_orthodb", "1300974at2759", "" ], [ "Q8BGW0-1", "protein_xref_orthodb", "337909at2759", "" ], [ "Q8BGW3-1", "protein_xref_orthodb", "1617813at2759", "" ], [ "Q8BGW2-1", "protein_xref_orthodb", "732956at2759", "" ], [ "Q497P9-1", "protein_xref_orthodb", "1919504at2759", "" ], [ "Q8BGW4-1", "protein_xref_orthodb", "885170at2759", "" ], [ "Q8BGW6-1", "protein_xref_orthodb", "668916at2759", "" ], [ "Q8BGW9-1", "protein_xref_orthodb", "1588126at2759", "" ], [ "Q8BGW8-1", "protein_xref_orthodb", "1146285at2759", "" ], [ "Q497P3-1", "protein_xref_orthodb", "1609352at2759", "" ], [ "Q3U3I9-1", "protein_xref_orthodb", "1318335at2759", "" ], [ "A2AAE1-1", "protein_xref_orthodb", "77777at2759", "" ], [ "Q3TNL8-1", "protein_xref_orthodb", "378719at2759", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OrthoDB\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T14:58:32.333977\n\nModified on\n - 2022-01-19T10:44:03.796306\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_orthodb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_xref_orthodb.csv\n Name: mouse_protein_xref_orthodb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19360\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10024\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/mouse_protein_xref_orthodb.csv" }