{ "bcoid": "GLY_000113", "title": "Human UniProtKB Xref OMA", "description": "The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "A2RU30-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_oma", "MVRVHHL", "" ], [ "A2RU30-1", "protein_xref_oma", "KAPCCTH", "" ], [ "Q96J66-1", "protein_xref_oma", "MKNKMCV", "" ], [ "Q96J65-1", "protein_xref_oma", "ANTVVLW", "" ], [ "Q6UW68-1", "protein_xref_oma", "WEASQLC", "" ], [ "Q8IYT4-1", "protein_xref_oma", "MKTQGKY", "" ], [ "A6NC51-1", "protein_xref_oma", "WICIIRY", "" ], [ "P40424-1", "protein_xref_oma", "NEYFYGH", "" ], [ "P40425-1", "protein_xref_oma", "GAGQMYS", "" ], [ "P40429-1", "protein_xref_oma", "GMLPWKT", "" ], [ "P62873-1", "protein_xref_oma", "ASQDGFM", "" ], [ "Q9Y691-1", "protein_xref_oma", "FACYSDP", "" ], [ "Q9NQU5-1", "protein_xref_oma", "HRQMPWP", "" ], [ "H0YL14-1", "protein_xref_oma", "IYSMHIT", "" ], [ "Q5VVP1-1", "protein_xref_oma", "IQHPEWP", "" ], [ "Q9H4G0-1", "protein_xref_oma", "HQERCTD", "" ], [ "Q8N865-1", "protein_xref_oma", "EEHRPKC", "" ], [ "A6NIR3-1", "protein_xref_oma", "SQECINL", "" ], [ "Q86VY4-1", "protein_xref_oma", "APETCST", "" ], [ "Q86VY9-1", "protein_xref_oma", "YWPQKEQ", "" ], [ "Q9Y5S9-1", "protein_xref_oma", "TIAVDWC", "" ], [ "P19075-1", "protein_xref_oma", "GCLKYSM", "" ], [ "Q99519-1", "protein_xref_oma", "WSPTEFI", "" ], [ "O15417-1", "protein_xref_oma", "LHDGKHC", "" ], [ "O75448-1", "protein_xref_oma", "RWSDSQW", "" ], [ "Q96RU3-1", "protein_xref_oma", "YADGWWE", "" ], [ "Q96RU2-1", "protein_xref_oma", "CKSHADK", "" ], [ "Q96RU8-1", "protein_xref_oma", "FFERDFG", "" ], [ "Q9H9Q4-1", "protein_xref_oma", "FGETAYH", "" ], [ "Q6ZRV2-1", "protein_xref_oma", "CNIHRSE", "" ], [ "P16520-1", "protein_xref_oma", "VWDSITT", "" ], [ "Q8NCJ5-1", "protein_xref_oma", "CHKGDIM", "" ], [ "Q9Y296-1", "protein_xref_oma", "GQRDGIN", "" ], [ "Q9Y297-1", "protein_xref_oma", "PTHTACY", "" ], [ "Q9Y294-1", "protein_xref_oma", "KINWDYG", "" ], [ "Q9Y295-1", "protein_xref_oma", "SAKHPGQ", "" ], [ "Q99613-1", "protein_xref_oma", "VSRTHSI", "" ], [ "P17027-1", "protein_xref_oma", "NAKLIWH", "" ], [ "Q99613-1", "protein_xref_oma", "VSRTHSI", "" ], [ "Q6ICB4-1", "protein_xref_oma", "WYGQEIM", "" ], [ "Q6ICB0-1", "protein_xref_oma", "IFMEYLT", "" ], [ "O75635-1", "protein_xref_oma", "YHGGISM", "" ], [ "P02144-1", "protein_xref_oma", "MRLFQDH", "" ], [ "P02144-1", "protein_xref_oma", "MRLFQDH", "" ], [ "P17693-1", "protein_xref_oma", "YWDLQTL", "" ], [ "O00507-1", "protein_xref_oma", "TGRIRMQ", "" ], [ "O00505-1", "protein_xref_oma", "XEAVWFL", "" ], [ "Q05397-1", "protein_xref_oma", "SELECMF", "" ], [ "Q05397-1", "protein_xref_oma", "SELECMF", "" ], [ "Q8IYD2-1", "protein_xref_oma", "KWEVLPA", "" ], [ "Q8IYD1-1", "protein_xref_oma", "NSAVTME", "" ], [ "Q8IYD9-1", "protein_xref_oma", "SQCECEN", "" ], [ "Q8IYD8-1", "protein_xref_oma", "EQPWDRE", "" ], [ "Q8IVD9-1", "protein_xref_oma", "CERYIDE", "" ], [ "Q12805-1", "protein_xref_oma", "LSHYCMH", "" ], [ "P24903-1", "protein_xref_oma", "TSGRPTM", "" ], [ "Q8IWU6-1", "protein_xref_oma", "TAPFWNX", "" ], [ "O95070-1", "protein_xref_oma", "SHYFQVS", "" ], [ "P02511-1", "protein_xref_oma", "PWFRRHF", "" ], [ "Q14181-1", "protein_xref_oma", "PFLDIEH", "" ], [ "Q8WX94-1", "protein_xref_oma", "WEVELMG", "" ], [ "O75346-1", "protein_xref_oma", "THKIHHT", "" ], [ "Q9UPY3-1", "protein_xref_oma", "YLMLFDP", "" ], [ "Q9P0Z9-1", "protein_xref_oma", "EMYSDPV", "" ], [ "Q9H6U6-1", "protein_xref_oma", "DATRIEC", "" ], [ "Q53F39-1", "protein_xref_oma", "SRTLHCM", "" ], [ "Q8TEB1-1", "protein_xref_oma", "TSIMTYR", "" ], [ "Q96JY6-1", "protein_xref_oma", "SKHHTCE", "" ], [ "O60507-1", "protein_xref_oma", "HHERYIN", "" ], [ "O95825-1", "protein_xref_oma", "PHKHDVI", "" ], [ "Q8N7C0-1", "protein_xref_oma", "LVYLDCH", "" ], [ "P15907-1", "protein_xref_oma", "ICVWKER", "" ], [ "Q86YS6-1", "protein_xref_oma", "CLVQRFK", "" ], [ "Q9UPQ0-1", "protein_xref_oma", "GPRQKFV", "" ], [ "Q92552-1", "protein_xref_oma", "KEKLPAC", "" ], [ "O00423-1", "protein_xref_oma", "FTGAINC", "" ], [ "Q9NV23-1", "protein_xref_oma", "FRLICFP", "" ], [ "Q12926-1", "protein_xref_oma", "MAPMSMD", "" ], [ "Q9NV29-1", "protein_xref_oma", "SAVCWKV", "" ], [ "Q9NUQ6-1", "protein_xref_oma", "CNLGRPK", "" ], [ "Q2M238-1", "protein_xref_oma", "VCSPAIV", "" ], [ "Q8WW38-1", "protein_xref_oma", "LKHPMSI", "" ], [ "O43312-1", "protein_xref_oma", "XSDYDYF", "" ], [ "P62714-1", "protein_xref_oma", "YDECYKK", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OMA\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-01-19T10:40:06.149239\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_oma.csv\n Name: human_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19095\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19018\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_xref_oma.csv" }