{ "bcoid": "GLY_000097", "title": "Human UniProtKB Xref CDD", "description": "The Human UniProtKB Xref CDD contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Cdd cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_cdd", "cd00288", "Pyruvate_Kinase" ], [ "Q92994-1", "protein_xref_cdd", "cd00043", "CYCLIN" ], [ "P10242-1", "protein_xref_cdd", "cd00167", "SANT" ], [ "Q8NC06-1", "protein_xref_cdd", "cd00435", "ACBP" ], [ "P40424-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40425-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40426-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40429-1", "protein_xref_cdd", "cd00392", "Ribosomal_L13" ], [ "O60506-1", "protein_xref_cdd", "cd12489", "RRM2_hnRNPQ" ], [ "P13804-1", "protein_xref_cdd", "cd01715", "ETF_alpha" ], [ "Q9NQU5-1", "protein_xref_cdd", "cd01093", "CRIB_PAK_like" ], [ "Q9BXR3-1", "protein_xref_cdd", "cd09909", "HIV-1-like_HR1-HR2" ], [ "Q9H4G0-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "Q9Y5S9-1", "protein_xref_cdd", "cd12324", "RRM_RBM8" ], [ "P41250-1", "protein_xref_cdd", "cd00774", "GlyRS-like_core" ], [ "Q96RU3-1", "protein_xref_cdd", "cd07676", "F-BAR_FBP17" ], [ "Q01813-1", "protein_xref_cdd", "cd00764", "Eukaryotic_PFK" ], [ "Q6ZRV2-1", "protein_xref_cdd", "cd09188", "PLDc_FAM83H_N" ], [ "Q9NQ36-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "Q8NCJ5-1", "protein_xref_cdd", "cd12908", "SPRYD3" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd00014", "CH" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "O15033-1", "protein_xref_cdd", "cd00078", "HECTc" ], [ "P56202-1", "protein_xref_cdd", "cd02248", "Peptidase_C1A" ], [ "Q6P087-1", "protein_xref_cdd", "cd02869", "PseudoU_synth_RluA_like" ], [ "Q8IYD8-1", "protein_xref_cdd", "cd18033", "DEXDc_FANCM" ], [ "Q8IVD9-1", "protein_xref_cdd", "cd06495", "p23_NUDCD3_like" ], [ "Q15831-1", "protein_xref_cdd", "cd14119", "STKc_LKB1" ], [ "Q8IYM1-1", "protein_xref_cdd", "cd01850", "CDC_Septin" ], [ "Q3ZCX4-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "Q12926-1", "protein_xref_cdd", "cd12650", "RRM1_Hu" ], [ "P35670-1", "protein_xref_cdd", "cd00371", "HMA" ], [ "Q86UL8-1", "protein_xref_cdd", "cd00201", "WW" ], [ "Q06413-1", "protein_xref_cdd", "cd00265", "MADS_MEF2_like" ], [ "P42566-1", "protein_xref_cdd", "cd00052", "EH" ], [ "Q9H239-1", "protein_xref_cdd", "cd00094", "HX" ], [ "Q9H239-1", "protein_xref_cdd", "cd04278", "ZnMc_MMP" ], [ "Q5JZY3-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "P35030-1", "protein_xref_cdd", "cd00190", "Tryp_SPc" ], [ "O75078-1", "protein_xref_cdd", "cd04269", "ZnMc_adamalysin_II_like" ], [ "Q9BSA4-1", "protein_xref_cdd", "cd07912", "Tweety_N" ], [ "Q96PU5-1", "protein_xref_cdd", "cd00078", "HECTc" ], [ "P60891-1", "protein_xref_cdd", "cd06223", "PRTases_typeI" ], [ "Q14584-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "P16499-1", "protein_xref_cdd", "cd00077", "HDc" ], [ "Q7LDG7-1", "protein_xref_cdd", "cd06224", "REM" ], [ "Q7LDG7-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "Q7LDG7-1", "protein_xref_cdd", "cd00029", "C1" ], [ "Q7LDG7-1", "protein_xref_cdd", "cd00155", "RasGEF" ], [ "Q8N157-1", "protein_xref_cdd", "cd11812", "SH3_AHI-1" ], [ "Q00839-1", "protein_xref_cdd", "cd12884", "SPRY_hnRNP" ], [ "Q9UBX0-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q05397-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "Q05397-1", "protein_xref_cdd", "cd13190", "FERM_C_FAK1" ], [ "O00142-1", "protein_xref_cdd", "cd01673", "dNK" ], [ "Q96LT9-1", "protein_xref_cdd", "cd12238", "RRM1_RBM40_like" ], [ "Q6ZTR7-1", "protein_xref_cdd", "cd07598", "BAR_FAM92" ], [ "Q9NR81-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q9NR81-1", "protein_xref_cdd", "cd10572", "PH_RhoGEF3_XPLN" ], [ "Q9H4B8-1", "protein_xref_cdd", "cd01301", "rDP_like" ], [ "P49642-1", "protein_xref_cdd", "cd04860", "AE_Prim_S" ], [ "O95925-1", "protein_xref_cdd", "cd00109", "KU" ], [ "Q92974-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q92974-1", "protein_xref_cdd", "cd00029", "C1" ], [ "Q92974-1", "protein_xref_cdd", "cd13393", "PH_ARHGEF2" ], [ "Q96B02-1", "protein_xref_cdd", "cd00195", "UBCc" ], [ "P57086-1", "protein_xref_cdd", "cd07936", "SCAN" ], [ "P57082-1", "protein_xref_cdd", "cd00182", "TBOX" ], [ "Q8TED1-1", "protein_xref_cdd", "cd00340", "GSH_Peroxidase" ], [ "Q8TED4-1", "protein_xref_cdd", "cd17344", "MFS_SLC37A1_2" ], [ "P60891-1", "protein_xref_cdd", "cd06223", "PRTases_typeI" ], [ "Q92859-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "Q9P0L1-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "Q7L8W6-1", "protein_xref_cdd", "cd01994", "Alpha_ANH_like_IV" ], [ "Q9NZR2-1", "protein_xref_cdd", "cd00112", "LDLa" ], [ "O60583-1", "protein_xref_cdd", "cd00043", "CYCLIN" ], [ "P20823-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q6ZUM4-1", "protein_xref_cdd", "cd00201", "WW" ], [ "Q6NWY9-1", "protein_xref_cdd", "cd00201", "WW" ], [ "O75290-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "P01040-1", "protein_xref_cdd", "cd00042", "CY" ], [ "P01042-1", "protein_xref_cdd", "cd00042", "CY" ], [ "Q9P1Z3-1", "protein_xref_cdd", "cd00038", "CAP_ED" ], [ "P04792-1", "protein_xref_cdd", "cd06475", "ACD_HspB1_like" ] ] }, "readme": "Name\n - Human UniProtKB Xref CDD\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T12:09:02.680538\n\nModified on\n - 2020-04-10T11:33:22.447768\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref CDD contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_cdd.csv\n Name: human_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4859\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2213\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"2213\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_xref_cdd.csv" }