{ "bcoid": "GLY_000095", "title": "Human UniProtKB Xref CAZy", "description": "The Human UniprotKB Xref CAZy contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Cazy", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q99519-1...", "protein_xref..." ], [ "Q9UEF7-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q99519-1", "protein_xref_cazy", "GH33", "Glycoside Hydrolase Family 33" ], [ "Q9UEF7-1", "protein_xref_cazy", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q9H7J1-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "Q9Y644-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q6UWU2-1", "protein_xref_cazy", "GH35", "Glycoside Hydrolase Family 35" ], [ "Q3V5L5-1", "protein_xref_cazy", "GT18", "Glycosyltransferase Family 18" ], [ "P61626-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q12794-1", "protein_xref_cazy", "GH56", "Glycoside Hydrolase Family 56" ], [ "P22310-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "O60656-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q7Z4W2-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q09327-1", "protein_xref_cazy", "GT17", "Glycosyltransferase Family 17" ], [ "Q09328-1", "protein_xref_cazy", "GT18", "Glycosyltransferase Family 18" ], [ "Q8IW92-1", "protein_xref_cazy", "GH35", "Glycoside Hydrolase Family 35" ], [ "Q9P109-1", "protein_xref_cazy", "GT14", "Glycosyltransferase Family 14" ], [ "Q2TAA5-1", "protein_xref_cazy", "GT4", "Glycosyltransferase Family 4" ], [ "Q96QH8-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "O75951-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q9HCG7-1", "protein_xref_cazy", "GH116", "Glycoside Hydrolase Family 116" ], [ "Q92611-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "Q6P4F1-1", "protein_xref_cazy", "GT10", "Glycosyltransferase Family 10" ], [ "Q8NFI3-1", "protein_xref_cazy", "GH85", "Glycoside Hydrolase Family 85" ], [ "O60909-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "A0PJZ3-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q9Y6A1-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "Q8IXA5-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q6UW63-1", "protein_xref_cazy", "GT90", "Glycosyltransferase Family 90" ], [ "Q14435-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q14435-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "P0DUB6-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "P04746-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q9Y2C3-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "P08236-1", "protein_xref_cazy", "GH2", "Glycoside Hydrolase Family 2" ], [ "Q9Y4K1-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "P54840-1", "protein_xref_cazy", "GT3", "Glycosyltransferase Family 3" ], [ "O15466-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9H227-1", "protein_xref_cazy", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q16842-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9H4F1-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q92187-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q92186-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q92185-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9NSC7-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q9BYC5-1", "protein_xref_cazy", "GT23", "Glycosyltransferase Family 23" ], [ "Q8NBL1-1", "protein_xref_cazy", "GT90", "Glycosyltransferase Family 90" ], [ "Q9Y478-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "Q3SY77-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q8IXK2-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q8IXK2-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ], [ "Q8IZ52-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q8IZ52-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "Q93063-1", "protein_xref_cazy", "GT47", "Glycosyltransferase Family 47" ], [ "Q93063-1", "protein_xref_cazy", "GT64", "Glycosyltransferase Family 64" ], [ "Q9BT22-1", "protein_xref_cazy", "GT33", "Glycosyltransferase Family 33" ], [ "Q96KX0-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "O15488-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "O95210-1", "protein_xref_cazy", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "P19526-1", "protein_xref_cazy", "GT11", "Glycosyltransferase Family 11" ], [ "Q15782-4", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "O43741-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "P35504-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "P35503-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9UNP4-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "Q8N0V5-1", "protein_xref_cazy", "GT14", "Glycosyltransferase Family 14" ], [ "Q9Y5Z6-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "P54855-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "P14410-1", "protein_xref_cazy", "GH31", "Glycoside Hydrolase Family 31" ], [ "Q92935-1", "protein_xref_cazy", "GT47", "Glycosyltransferase Family 47" ], [ "Q92935-1", "protein_xref_cazy", "GT64", "Glycosyltransferase Family 64" ], [ "P15907-1", "protein_xref_cazy", "GT29", "Glycosyltransferase Family 29" ], [ "O43286-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "O43280-1", "protein_xref_cazy", "GH37", "Glycoside Hydrolase Family 37" ], [ "Q9BZQ6-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "Q9BVK2-1", "protein_xref_cazy", "GT57", "Glycosyltransferase Family 57" ], [ "Q70JA7-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q70JA7-1", "protein_xref_cazy", "GT7", "Glycosyltransferase Family 7" ], [ "Q9UBQ6-1", "protein_xref_cazy", "GT64", "Glycosyltransferase Family 64" ], [ "O96024-1", "protein_xref_cazy", "GT31", "Glycosyltransferase Family 31" ], [ "Q16880-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9P2W7-1", "protein_xref_cazy", "GT43", "Glycosyltransferase Family 43" ], [ "Q6UWM7-1", "protein_xref_cazy", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q6UWM9-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q9NY28-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q9NY28-1", "protein_xref_cazy", "GT27", "Glycosyltransferase Family 27" ] ] }, "readme": "Name\n - Human UniProtKB Xref CAZy\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T12:05:44.324142\n\nModified on\n - 2020-04-10T11:32:58.654843\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref CAZy contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - CAZy is a database of Carbohydrate-Active enZYmes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates.\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_cazy.csv\n Name: human_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"294\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"78\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"78\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_xref_cazy.csv" }