{ "bcoid": "GLY_000028", "title": "Gene Expression (Normal)", "description": "The Gene Expression (Normal) dataset contains the normal expression information of human [taxid:9606] ...", "filename": "human_protein_expression_normal.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Normal Gene Expression", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A075B6H5-1...", "UBERON:00009..." ], [ "A0A075B6H5-1...", "UBERON:00020..." ] ], "headers": [ "uniprotkb_ca...", "uberon_anato..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uberon_anatomical_id" }, { "type": "string", "label": "uberon_anatomical_name" }, { "type": "string", "label": "uberon_developmental_id" }, { "type": "string", "label": "uberon_developmental_name" }, { "type": "string", "label": "expression_level_gene_relative" }, { "type": "string", "label": "expression_level_anatomical_relative" }, { "type": "string", "label": "call_quality" }, { "type": "string", "label": "expression_rank_score" }, { "type": "string", "label": "expression_score" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "A0A075B6H5-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.60E+04", "16.41", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.54E+04", "17.5", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.49E+04", "18.51", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "3.50E+04", "36.4", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "3.54E+04", "35.67", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.58E+04", "16.88", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.70E+04", "14.63", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H5-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "ABSENT", "ABSENT", "SILVER", "4.57E+04", "16.94", "protein_xref_bgee", "ENSG00000205274" ], [ "A0A075B6H7-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "6.58E+03", "88.05", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "SILVER", "3.24E+04", "41.16", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "GOLD", "3.80E+04", "31.07", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "2.87E+04", "47.84", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "3.74E+04", "32.15", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.73E+04", "50.46", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.36E+04", "57.2", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H7-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "5.18E+03", "90.59", "protein_xref_bgee", "ENSG00000243063" ], [ "A0A075B6H8-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.54E+04", "72.11", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "3.88E+04", "29.53", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "3.72E+04", "32.4", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.61E+04", "16.34", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "3.93E+04", "28.61", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "GOLD", "3.36E+04", "39.01", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.83E+04", "48.69", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H8-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "5.41E+03", "90.18", "protein_xref_bgee", "ENSG00000211633" ], [ "A0A075B6H9-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.35E+03", "97.55", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.70E+04", "50.93", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.46E+04", "55.33", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "2.36E+04", "57.06", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.09E+04", "62.01", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.32E+04", "76.06", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "1.59E+04", "71.07", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6H9-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "585", "98.94", "protein_xref_bgee", "ENSG00000211637" ], [ "A0A075B6I0-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.34E+03", "97.58", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.32E+04", "57.84", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "1.81E+04", "67.1", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.31E+04", "58.11", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "1.74E+04", "68.37", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.54E+04", "53.92", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.35E+04", "75.44", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.05E+04", "80.94", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I0-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "3.93E+03", "92.86", "protein_xref_bgee", "ENSG00000211638" ], [ "A0A075B6I1-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.07E+04", "80.52", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "GOLD", "3.38E+04", "38.63", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.58E+04", "53.14", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0002048", "lung", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.89E+04", "47.6", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0000995", "uterus", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "GOLD", "2.76E+04", "49.96", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.75E+04", "50.11", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.78E+04", "49.48", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0001155", "colon", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.29E+04", "58.51", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.26E+04", "59.04", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "1.97E+04", "64.24", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0000167", "oral cavity", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "SILVER", "2.31E+04", "58.01", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I1-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "6.26E+03", "88.64", "protein_xref_bgee", "ENSG00000211639" ], [ "A0A075B6I3-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.60E+04", "16.41", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.55E+04", "17.36", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.49E+04", "18.51", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.61E+04", "16.34", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.71E+04", "14.41", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.58E+04", "16.88", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "ABSENT", "ABSENT", "SILVER", "4.08E+04", "25.97", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I3-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "MEDIUM", "MEDIUM", "SILVER", "2.65E+04", "51.81", "protein_xref_bgee", "ENSG00000211641" ], [ "A0A075B6I4-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.12E+03", "97.97", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "GOLD", "3.29E+04", "40.25", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.50E+04", "54.68", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "SILVER", "3.27E+04", "40.57", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "3.03E+04", "44.94", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "1.86E+04", "66.2", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.28E+04", "76.77", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I4-1", "UBERON:0001052", "rectum", "UBERON:0000113", "post-juvenile adult stage", "HIGH", "HIGH", "SILVER", "4.21E+03", "92.37", "protein_xref_bgee", "ENSG00000211642" ], [ "A0A075B6I6-1", "UBERON:0000945", "stomach", "HsapDv:0000087", "human adult stage (human)", "HIGH", "HIGH", "GOLD", "1.12E+04", "79.59", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0002046", "thyroid gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "2.99E+04", "45.68", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0001043", "esophagus", "HsapDv:0000087", "human adult stage (human)", "LOW", "LOW", "SILVER", "4.55E+04", "17.43", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0000082", "adult mammalian kidney", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "GOLD", "2.45E+04", "55.58", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0001255", "urinary bladder", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "SILVER", "3.33E+04", "39.55", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0002367", "prostate gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "2.42E+04", "56.06", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0002107", "liver", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "LOW", "GOLD", "3.12E+04", "43.34", "protein_xref_bgee", "ENSG00000211645" ], [ "A0A075B6I6-1", "UBERON:0005200", "thoracic mammary gland", "HsapDv:0000087", "human adult stage (human)", "MEDIUM", "MEDIUM", "SILVER", "2.52E+04", "54.29", "protein_xref_bgee", "ENSG00000211645" ] ] }, "readme": "Name\n - Gene Expression (Normal)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.895453\n\nModified on\n - 2022-01-12T16:02:26.535273\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Gene Expression (Normal) dataset contains the normal expression information of human [taxid:9606] genes from BioXpress database. The GlyGen Interface shows the normal gene expression information for select UBERON ids only which are mapped to corresponding DOIDs and have gene expression in cancer information for those DOID. For more gene expression information of other UBERON IDs (tissues) for a given gene, please refer to BioXpress - https://hive.biochemistry.gwu.edu/bioxpress. BioXpress is a gene/miRNA expression and disease association database with expression levels mapped to genes or miRNAs. The current version of BioXpress contains only genes associated with cancer. If you are using this dataset please give proper attribution to GlyGen and BioXpress\n\nDescription Domain\n Keywords\n - normal gene expression\n - BioXpress\n - UBERON\n - tissue\n - Bgee\n\n Pipeline Steps\n - Step-1: The script extracts the expression information and maps the UniProtKB accession/gene symbol to UniProtKB canonical expression\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: doid2uberonid_mapping_v5.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/misc/doid2uberonid_mapping_v5.csv\n Name: human_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_masterlist.csv\n Name: human_normal_expression_custom_filtered.csv\n URI: https:/data.glygen.org/ln2downloads/bioxpress/2021_08/human_normal_expression_custom_filtered.csv\n Output Subdomain\n Name: human_protein_expression_normal.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_expression_normal.csv\n Name: human_protein_expression_normal.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_expression_normal.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19371\"\n Name: \"uberon_anatomical_id\"\n Description: \"\"\n Unique Values: \"13\"\n Name: \"uberon_anatomical_name\"\n Description: \"\"\n Unique Values: \"13\"\n Name: \"uberon_developmental_id\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"uberon_developmental_name\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"expression_level_gene_relative\"\n Description: \"\"\n Unique Values: \"4\"\n Name: \"expression_level_anatomical_relative\"\n Description: \"\"\n Unique Values: \"4\"\n Name: \"call_quality\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"expression_rank_score\"\n Description: \"\"\n Unique Values: \"2678\"\n Name: \"expression_score\"\n Description: \"\"\n Unique Values: \"8363\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"18788\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_expression_normal.csv" }