{
    "bcoid": "GLY_000612",
    "title": "SARS-CoV1 Glycosylation Sites (Literature)",
    "description": "",
    "filename": "sarscov1_proteoform_glycosylation_sites_literature.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Proteoform",
        "tags": "Glycosylation Sites",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "4..."
            ],
            [
                "P59596-1...",
                "4..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "evidence"
                },
                {
                    "type": "string",
                    "label": "cell_line_name"
                },
                {
                    "type": "string",
                    "label": "cellosaurus_cell_line_name"
                },
                {
                    "type": "string",
                    "label": "cellosaurus_cell_line_ac"
                },
                {
                    "type": "string",
                    "label": "cell_line_species"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                }
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_glygen_ds",
                "GLYDS000515",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "BHK-T7",
                "BHK TK-",
                "CVCL_4126",
                "Mesocricetus auratus (Golden hamster) (NCBI Taxonomy: 10036)",
                "NGT",
                "NXT"
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pubmed",
                "16442106",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "BHK-T7",
                "BHK TK-",
                "CVCL_4126",
                "Mesocricetus auratus (Golden hamster) (NCBI Taxonomy: 10036)",
                "NGT",
                "NXT"
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_glygen_ds",
                "GLYDS000515",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "Vero",
                "Vero",
                "CVCL_0059",
                "Chlorocebus sabaeus (Green monkey) (Cercopithecus sabaeus) (NCBI Taxonomy: 60711)",
                "NGT",
                "NXT"
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pubmed",
                "16442106",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "Vero",
                "Vero",
                "CVCL_0059",
                "Chlorocebus sabaeus (Green monkey) (Cercopithecus sabaeus) (NCBI Taxonomy: 60711)",
                "NGT",
                "NXT"
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_glygen_ds",
                "GLYDS000515",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "Huh7",
                "Huh-7",
                "CVCL_0336",
                "Homo sapiens (Human) (NCBI Taxonomy: 9606)",
                "NGT",
                "NXT"
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pubmed",
                "16442106",
                "protein_xref_glygen_ds",
                "GLYDS000510",
                "",
                "",
                "Huh7",
                "Huh-7",
                "CVCL_0336",
                "Homo sapiens (Human) (NCBI Taxonomy: 9606)",
                "NGT",
                "NXT"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Glycosylation Sites (Literature)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2021-10-15T15:07:06.347029\n\nModified on\n   - 2020-05-07T18:19:55.454009\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - \n\nDescription Domain\n   Keywords\n   - glycosylation\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: \n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov1_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/sarscov1_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n      URI: http://data.glygen.org/datasets/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv\n      Name: sarscov1_proteoform_glycosylation_sites_literature.stat.csv\n      URI: http://data.glygen.org/datasets/reviewed/sarscov1_proteoform_glycosylation_sites_literature.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv"
}