{ "bcoid": "GLY_000527", "title": "Sandbox accessions (GlyTouCan Accession)", "description": "The dataset includes GlyTouCan accessions included in Sandbox application.", "filename": "glycan_xref_sandbox.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Sanbox Glycan accessions", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "G00012RZ...", "G00012RZ..." ], [ "G00025YC...", "G00025YC..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G00012RZ", "G00012RZ", "glycan_xref_sandbox" ], [ "G00025YC", "G00025YC", "glycan_xref_sandbox" ], [ "G00026MO", "G00026MO", "glycan_xref_sandbox" ], [ "G00027JG", "G00027JG", "glycan_xref_sandbox" ], [ "G00028MO", "G00028MO", "glycan_xref_sandbox" ], [ "G00029MO", "G00029MO", "glycan_xref_sandbox" ], [ "G00030HB", "G00030HB", "glycan_xref_sandbox" ], [ "G00030MO", "G00030MO", "glycan_xref_sandbox" ], [ "G00031MO", "G00031MO", "glycan_xref_sandbox" ], [ "G00032MO", "G00032MO", "glycan_xref_sandbox" ], [ "G00033MO", "G00033MO", "glycan_xref_sandbox" ], [ "G00034MO", "G00034MO", "glycan_xref_sandbox" ], [ "G00035MO", "G00035MO", "glycan_xref_sandbox" ], [ "G00036MO", "G00036MO", "glycan_xref_sandbox" ], [ "G00037MO", "G00037MO", "glycan_xref_sandbox" ], [ "G00038MO", "G00038MO", "glycan_xref_sandbox" ], [ "G00039MO", "G00039MO", "glycan_xref_sandbox" ], [ "G00040MO", "G00040MO", "glycan_xref_sandbox" ], [ "G00041IL", "G00041IL", "glycan_xref_sandbox" ], [ "G00041MO", "G00041MO", "glycan_xref_sandbox" ], [ "G00042MO", "G00042MO", "glycan_xref_sandbox" ], [ "G00056HH", "G00056HH", "glycan_xref_sandbox" ], [ "G00063MO", "G00063MO", "glycan_xref_sandbox" ], [ "G00094SE", "G00094SE", "glycan_xref_sandbox" ], [ "G00112IO", "G00112IO", "glycan_xref_sandbox" ], [ "G00155YT", "G00155YT", "glycan_xref_sandbox" ], [ "G00167VE", "G00167VE", "glycan_xref_sandbox" ], [ "G00171RJ", "G00171RJ", "glycan_xref_sandbox" ], [ "G00176HZ", "G00176HZ", "glycan_xref_sandbox" ], [ "G00186OS", "G00186OS", "glycan_xref_sandbox" ], [ "G00211WY", "G00211WY", "glycan_xref_sandbox" ], [ "G00219DO", "G00219DO", "glycan_xref_sandbox" ], [ "G00221CZ", "G00221CZ", "glycan_xref_sandbox" ], [ "G00227RN", "G00227RN", "glycan_xref_sandbox" ], [ "G00230CO", "G00230CO", "glycan_xref_sandbox" ], [ "G00231IQ", "G00231IQ", "glycan_xref_sandbox" ], [ "G00231WL", "G00231WL", "glycan_xref_sandbox" ], [ "G00247JV", "G00247JV", "glycan_xref_sandbox" ], [ "G00247PL", "G00247PL", "glycan_xref_sandbox" ], [ "G00249IY", "G00249IY", "glycan_xref_sandbox" ], [ "G00279YF", "G00279YF", "glycan_xref_sandbox" ], [ "G00281HB", "G00281HB", "glycan_xref_sandbox" ], [ "G00287UD", "G00287UD", "glycan_xref_sandbox" ], [ "G00288RP", "G00288RP", "glycan_xref_sandbox" ], [ "G00318AV", "G00318AV", "glycan_xref_sandbox" ], [ "G00320ZP", "G00320ZP", "glycan_xref_sandbox" ], [ "G00325UK", "G00325UK", "glycan_xref_sandbox" ], [ "G00328CG", "G00328CG", "glycan_xref_sandbox" ], [ "G00335DM", "G00335DM", "glycan_xref_sandbox" ], [ "G00349CA", "G00349CA", "glycan_xref_sandbox" ], [ "G00361YF", "G00361YF", "glycan_xref_sandbox" ], [ "G00371DJ", "G00371DJ", "glycan_xref_sandbox" ], [ "G00376RB", "G00376RB", "glycan_xref_sandbox" ], [ "G00383KP", "G00383KP", "glycan_xref_sandbox" ], [ "G00383YF", "G00383YF", "glycan_xref_sandbox" ], [ "G00394CR", "G00394CR", "glycan_xref_sandbox" ], [ "G00396IE", "G00396IE", "glycan_xref_sandbox" ], [ "G00412SV", "G00412SV", "glycan_xref_sandbox" ], [ "G00413UF", "G00413UF", "glycan_xref_sandbox" ], [ "G00423TL", "G00423TL", "glycan_xref_sandbox" ], [ "G00428HK", "G00428HK", "glycan_xref_sandbox" ], [ "G00430ZK", "G00430ZK", "glycan_xref_sandbox" ], [ "G00432WV", "G00432WV", "glycan_xref_sandbox" ], [ "G00433KW", "G00433KW", "glycan_xref_sandbox" ], [ "G00438EF", "G00438EF", "glycan_xref_sandbox" ], [ "G00451UT", "G00451UT", "glycan_xref_sandbox" ], [ "G00463XD", "G00463XD", "glycan_xref_sandbox" ], [ "G00467QU", "G00467QU", "glycan_xref_sandbox" ], [ "G00468KU", "G00468KU", "glycan_xref_sandbox" ], [ "G00468NI", "G00468NI", "glycan_xref_sandbox" ], [ "G00470UO", "G00470UO", "glycan_xref_sandbox" ], [ "G00480KJ", "G00480KJ", "glycan_xref_sandbox" ], [ "G00487XO", "G00487XO", "glycan_xref_sandbox" ], [ "G00492CQ", "G00492CQ", "glycan_xref_sandbox" ], [ "G00503EE", "G00503EE", "glycan_xref_sandbox" ], [ "G00504PK", "G00504PK", "glycan_xref_sandbox" ], [ "G00504PZ", "G00504PZ", "glycan_xref_sandbox" ], [ "G00514XC", "G00514XC", "glycan_xref_sandbox" ], [ "G00520NI", "G00520NI", "glycan_xref_sandbox" ], [ "G00523YW", "G00523YW", "glycan_xref_sandbox" ], [ "G00531ZU", "G00531ZU", "glycan_xref_sandbox" ], [ "G00536FZ", "G00536FZ", "glycan_xref_sandbox" ], [ "G00544JF", "G00544JF", "glycan_xref_sandbox" ], [ "G00545NQ", "G00545NQ", "glycan_xref_sandbox" ] ] }, "readme": "Name\n - Sandbox accessions (GlyTouCan Accession)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-09-10T15:28:11.224030\n\nModified on\n - 2021-03-17T15:26:28.168734\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset includes GlyTouCan accessions included in Sandbox application.\n\nDescription Domain\n Keywords\n - GlyTouCan accessions\n - Glycans\n - Sandbox\n\n Pipeline Steps\n - Step-1: The dataset was directly downloaded from the provider and a script was used to check if the GlyTouCan Ac is included in the glycan masterlist (https://data.glygen.org/GLY_000281)\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sandbox_accessions.csv\n URI: https://data.glygen.org//ln2downloads/sandbox/11_24_2021/sandbox_accessions.csv\n Output Subdomain\n Name: glycan_xref_sandbox.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_xref_sandbox.csv\n Name: glycan_xref_sandbox.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_xref_sandbox.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_xref_sandbox.csv" }