{ "bcoid": "GLY_000497", "title": "N-linked Byonic Glycan [Human]", "description": "The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.). The listed ...", "filename": "glycan_type_n_linked_byonic.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Byonic", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G02438LG...", "dHex(1) % 14..." ], [ "G81399MY...", "Hex(1) % 162..." ] ], "headers": [ "glytoucan_ac...", "byonic..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "byonic" } ], [ "G02438LG", "dHex(1) % 146.057909" ], [ "G81399MY", "Hex(1) % 162.052823" ], [ "G29068FM", "HexNAc(1) % 203.079373" ], [ "G06829PV", "Hex(1)Phospho(1) % 242.019154" ], [ "G76685HR", "NeuAc(1) % 291.095417" ], [ "G25325JY", "Hex(1)Pent(1) % 294.095082" ], [ "G08453HV", "Hex(1)dHex(1) % 308.110732" ], [ "G90627TW", "Hex(2) % 324.105647" ], [ "G00194GV", "HexNAc(1)dHex(1) % 349.137281" ], [ "G43417UB", "HexNAc(1)Hex(1) % 365.132196" ], [ "G59365RI", "Hex(2)Sulpho(1) % 404.062462" ], [ "G38621WW", "Hex(2)Phospho(1) % 404.071978" ], [ "G27391WQ", "HexNAc(2) % 406.158745" ], [ "G42518JM", "Hex(1)Pent(2) % 426.137341" ], [ "G06461TM", "HexNAc(1)Hex(1)Sulpho(1) % 445.089011" ], [ "G88764HN", "Hex(1)NeuAc(1) % 453.148240" ], [ "G81216TA", "Hex(2)Pent(1) % 456.147906" ], [ "G89864HJ", "Hex(2)dHex(1) % 470.163556" ], [ "G68627ND", "HexNAc(1)dHex(1)Pent(1) % 481.179540" ], [ "G31282CB", "HexNAc(2)Sulpho(1) % 486.115560" ], [ "G39365VM", "Hex(3) % 486.158471" ], [ "G90085MT", "HexNAc(1)NeuAc(1) % 494.174789" ], [ "G74392IM", "HexNAc(1)dHex(2) % 495.195190" ], [ "G54129SE", "HexNAc(1)Hex(1)dHex(1) % 511.190105" ], [ "G05394UY", "HexNAc(1)Hex(2) % 527.185020" ], [ "G06042JP", "HexNAc(2)dHex(1) % 552.216654" ], [ "G58001LT", "HexNAc(2)Hex(1) % 568.211569" ], [ "G33147DG", "NeuAc(2) % 582.190833" ], [ "G26918LL", "HexNAc(1)Hex(1)dHex(1)Sulpho(1) % 591.146920" ], [ "G06932DR", "HexNAc(1)Hex(2)Sulpho(1) % 607.141834" ], [ "G40740AD", "HexNAc(3) % 609.238118" ], [ "G94094XU", "Hex(2)NeuAc(1) % 615.201064" ], [ "G39329TJ", "Hex(2)dHex(2) % 616.221465" ], [ "G32406CO", "HexNAc(2)Hex(1)Sulpho(1) % 648.168383" ], [ "G90306QO", "Hex(4) % 648.211294" ], [ "G17015OC", "HexNAc(1)Hex(1)NeuAc(1) % 656.227613" ], [ "G82458HY", "HexNAc(1)Hex(1)dHex(2) % 657.248014" ], [ "G11235SR", "HexNAc(1)Hex(2)dHex(1) % 673.242928" ], [ "G73857SS", "HexNAc(1)Hex(2)Sulpho(2) % 687.098649" ], [ "G08590QR", "HexNAc(1)Hex(3) % 689.237843" ], [ "G68985JM", "HexNAc(2)NeuAc(1) % 697.254162" ], [ "G94583DZ", "HexNAc(2)Hex(1)dHex(1) % 714.269478" ], [ "G53434XO", "HexNAc(2)Hex(2) % 730.264392" ], [ "G71502QP", "HexNAc(1)Hex(1)NeuAc(1)Sulpho(1) % 736.184427" ], [ "G38529AQ", "HexNAc(1)Hex(2)dHex(1)Sulpho(1) % 753.199743" ], [ "G49159VE", "Hex(2)dHex(1)NeuAc(1) % 761.258973" ], [ "G75959TE", "HexNAc(1)Hex(3)Sulpho(1) % 769.194658" ], [ "G88713AC", "HexNAc(3)Hex(1) % 771.290941" ], [ "G07888KH", "Hex(3)dHex(2) % 778.274288" ], [ "G19865KY", "Hex(4)dHex(1) % 794.269203" ], [ "G98896IU", "HexNAc(1)Hex(1)dHex(1)NeuAc(1) % 802.285522" ], [ "G66863RH", "HexNAc(2)Hex(2)Sulpho(1) % 810.221207" ], [ "G84322TE", "Hex(5) % 810.264117" ], [ "G84435MS", "HexNAc(4) % 812.317490" ], [ "G38025DM", "HexNAc(1)Hex(2)NeuAc(1) % 818.280436" ], [ "G67199LR", "HexNAc(1)Hex(2)dHex(2) % 819.300837" ], [ "G54630CD", "HexNAc(1)Hex(3)dHex(1) % 835.295752" ], [ "G60032AU", "HexNAc(1)Hex(3)Sulpho(2) % 849.151472" ], [ "G15666IG", "HexNAc(1)Hex(4) % 851.290667" ], [ "G48586RX", "HexNAc(2)Hex(1)NeuAc(1) % 859.306985" ], [ "G05460KC", "HexNAc(2)Hex(1)dHex(2) % 860.327386" ], [ "G93579XB", "HexNAc(2)Hex(2)dHex(1) % 876.322301" ], [ "G05761AI", "HexNAc(1)Hex(1)dHex(1)NeuAc(1)Sulpho(1) % 882.242336" ], [ "G18981TN", "HexNAc(2)Hex(2)Sulpho(2) % 890.178021" ], [ "G28681TP", "HexNAc(2)Hex(3) % 892.317216" ], [ "G84701HV", "Hex(2)NeuAc(2) % 906.296480" ], [ "G21259PI", "HexNAc(3)Hex(1)dHex(1) % 917.348850" ], [ "G71600XR", "HexNAc(1)Hex(4)Sulpho(1) % 931.247481" ], [ "G73004SD", "HexNAc(3)Hex(2) % 933.343765" ], [ "G45546UJ", "HexNAc(2)Hex(1)NeuAc(1)Sulpho(1) % 939.263800" ], [ "G67172VF", "Hex(4)dHex(2) % 940.327112" ], [ "G23729WG", "HexNAc(1)Hex(1)NeuAc(2) % 947.323029" ], [ "G67631MS", "HexNAc(2)Hex(2)dHex(1)Sulpho(1) % 956.279116" ], [ "G01879YS", "HexNAc(1)Hex(2)dHex(1)NeuAc(1) % 964.338345" ], [ "G35726GI", "HexNAc(1)Hex(2)dHex(3) % 965.358746" ], [ "G32030CB", "Hex(6) % 972.316941" ], [ "G30190ML", "HexNAc(4)Hex(1) % 974.370314" ], [ "G09816OK", "HexNAc(1)Hex(3)NeuAc(1) % 980.333260" ], [ "G22955WV", "HexNAc(1)Hex(3)dHex(2) % 981.353661" ], [ "G38638KM", "HexNAc(2)NeuAc(2) % 988.349578" ], [ "G25928EE", "HexNAc(1)Hex(4)dHex(1) % 997.348575" ], [ "G87384DY", "HexNAc(2)Hex(1)dHex(1)NeuAc(1) % 1005.364894" ], [ "G95440AJ", "HexNAc(2)Hex(2)dHex(1)Pent(1) % 1008.364560" ], [ "G22172OT", "HexNAc(3)Hex(2)Sulpho(1) % 1013.300579" ] ] }, "readme": "Name\n - N-linked Byonic Glycan [Human]\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-05-12T18:50:02.969226\n\nModified on\n - 2022-01-13T17:03:53.747939\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/. \n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Byonic\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: type_n_linked_byonic.tsv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/source/type_n_linked_byonic.tsv\n Output Subdomain\n Name: glycan_type_n_linked_byonic.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_type_n_linked_byonic.csv\n Name: glycan_type_n_linked_byonic.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_type_n_linked_byonic.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_type_n_linked_byonic.csv" }