{ "bcoid": "GLY_000483", "title": "Human Proteoform Citations (GlyConnect)", "description": "The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "human_proteoform_citations_glycosylation_glyconnect.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P19835-1...", "The structur..." ], [ "P19835-1...", "The structur..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G55373ZG" ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G44215PV" ], [ "P01588-1", "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "Biochemistry", "1988 Jul 26", "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P01588-1", "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "Biochemistry", "1988 Jul 26", "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P01588-1", "Comparative study of the asparagine-linked sugar chains of human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "The Journal of biological chemistry", "1988 Mar 15", "Takeuchi M, Takasaki S, Miyazaki H, Kato T, Hoshi S, Kochibe N, Kobata A", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P01588-1", "Comparative study of the asparagine-linked sugar chains of human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "The Journal of biological chemistry", "1988 Mar 15", "Takeuchi M, Takasaki S, Miyazaki H, Kato T, Hoshi S, Kochibe N, Kobata A", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P01588-1", "Biological and physicochemical characterization of recombinant human erythropoietins fractionated by Mono Q column chromatography and their modification with sialyltransferase.", "Glycoconjugate journal", "1996 Dec", "Morimoto K, Tsuda E, Said AA, Uchida E, Hatakeyama S, Ueda M, Hayakawa T", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P01588-1", "Biological and physicochemical characterization of recombinant human erythropoietins fractionated by Mono Q column chromatography and their modification with sialyltransferase.", "Glycoconjugate journal", "1996 Dec", "Morimoto K, Tsuda E, Said AA, Uchida E, Hatakeyama S, Ueda M, Hayakawa T", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P10646-1", "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "Biochemistry", "1996 May 21", "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "G51562OR" ], [ "P10646-1", "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "Biochemistry", "1996 May 21", "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "G70894RY" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G22768VO" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G14669DU" ], [ "P56817-1", "Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines.", "The Journal of biological chemistry", "2001 May 18", "Charlwood J, Dingwall C, Matico R, Hussain I, Johanson K, Moore S, Powell DJ, Skehel JM, Ratcliffe S, Clarke B, Trill J, Sweitzer S, Camilleri P", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "G22768VO" ], [ "P56817-1", "Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines.", "The Journal of biological chemistry", "2001 May 18", "Charlwood J, Dingwall C, Matico R, Hussain I, Johanson K, Moore S, Powell DJ, Skehel JM, Ratcliffe S, Clarke B, Trill J, Sweitzer S, Camilleri P", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "G14669DU" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G74038AG" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G94854LT" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G81541IU" ], [ "P04275-1", "Structures of the asparagine-linked oligosaccharide chains of human von Willebrand factor. Occurrence of blood group A, B, and H(O) structures.", "The Journal of biological chemistry", "1992 May 5", "Matsui T, Titani K, Mizuochi T", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "G47175EF" ], [ "P04275-1", "Structures of the asparagine-linked oligosaccharide chains of human von Willebrand factor. Occurrence of blood group A, B, and H(O) structures.", "The Journal of biological chemistry", "1992 May 5", "Matsui T, Titani K, Mizuochi T", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "G44215PV" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G88555GL" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G88756OE" ], [ "P14151-1", "Carbohydrate structures of soluble human L-selectin recombinantly expressed in baby-hamster kidney cells.", "Biotechnology and applied biochemistry", "2000 Aug", "Gohlke M, Mach U, Nuck R, Zimmermann-Kordmann M, Grunow D, Fieger C, Volz B, Tauber R, Petri T, Debus N, Reutter W", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "G55373ZG" ], [ "P14151-1", "Carbohydrate structures of soluble human L-selectin recombinantly expressed in baby-hamster kidney cells.", "Biotechnology and applied biochemistry", "2000 Aug", "Gohlke M, Mach U, Nuck R, Zimmermann-Kordmann M, Grunow D, Fieger C, Volz B, Tauber R, Petri T, Debus N, Reutter W", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "G44215PV" ], [ "P33151-1", "Characterization of human vascular endothelial cadherin glycans.", "Glycobiology", "1999 Sep", "Geyer H, Geyer R, Odenthal-Schnittler M, Schnittler HJ", "protein_xref_pubmed", "10460833", "protein_xref_glyconnect", "617", "G05751AZ" ], [ "P33151-1", "Characterization of human vascular endothelial cadherin glycans.", "Glycobiology", "1999 Sep", "Geyer H, Geyer R, Odenthal-Schnittler M, Schnittler HJ", "protein_xref_pubmed", "10460833", "protein_xref_glyconnect", "617", "G15169WU" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G53435KM" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G63794QO" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G31916IQ" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G16828VN" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G72735IY" ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G16828VN" ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G72735IY" ], [ "P04114-1", "High-mannose structure of apolipoprotein-B from low-density lipoproteins of human plasma.", "European journal of biochemistry", "1985 Oct 1", "Vauhkonen M, Viitala J, Parkkinen J, Rauvala H", "protein_xref_pubmed", "4043085", "protein_xref_glyconnect", "57", "G04689DA" ], [ "P04114-1", "High-mannose structure of apolipoprotein-B from low-density lipoproteins of human plasma.", "European journal of biochemistry", "1985 Oct 1", "Vauhkonen M, Viitala J, Parkkinen J, Rauvala H", "protein_xref_pubmed", "4043085", "protein_xref_glyconnect", "57", "G05724UK" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G65562ZE" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G74722FL" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G45546UR" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G34617SM" ], [ "P00747-1", "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "Biochemistry", "1991 Jan 22", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "1899031", "protein_xref_glyconnect", "502", "G22768VO" ], [ "P00747-1", "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "Biochemistry", "1991 Jan 22", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "1899031", "protein_xref_glyconnect", "502", "G14669DU" ], [ "P00747-1", "Asparagine-linked oligosaccharide processing in lepidopteran insect cells. Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "Biochemistry", "1991 Jun 25", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "2059624", "protein_xref_glyconnect", "502", "G22768VO" ], [ "P00747-1", "Asparagine-linked oligosaccharide processing in lepidopteran insect cells. Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "Biochemistry", "1991 Jun 25", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "2059624", "protein_xref_glyconnect", "502", "G14669DU" ], [ "P00747-1", "Oligosaccharide processing in the expression of human plasminogen cDNA by lepidopteran insect (Spodoptera frugiperda) cells.", "Biochemistry", "1990 Jun 12", "Davidson DJ, Fraser MJ, Castellino FJ", "protein_xref_pubmed", "2386787", "protein_xref_glyconnect", "502", "G22768VO" ], [ "P00747-1", "Oligosaccharide processing in the expression of human plasminogen cDNA by lepidopteran insect (Spodoptera frugiperda) cells.", "Biochemistry", "1990 Jun 12", "Davidson DJ, Fraser MJ, Castellino FJ", "protein_xref_pubmed", "2386787", "protein_xref_glyconnect", "502", "G14669DU" ], [ "P00747-1", "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "Biochemistry", "1991 Jul 9", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "2065054", "protein_xref_glyconnect", "502", "G22768VO" ], [ "P00747-1", "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "Biochemistry", "1991 Jul 9", "Davidson DJ, Castellino FJ", "protein_xref_pubmed", "2065054", "protein_xref_glyconnect", "502", "G14669DU" ], [ "P00797-1", "Glycosylation of recombinant prorenin in insect cells: the insect cell line Sf9 does not express the mannose 6-phosphate recognition signal.", "Biochemistry", "1994 Jul 26", "Aeed PA, Elhammer AP", "protein_xref_pubmed", "8038170", "protein_xref_glyconnect", "513", "G22768VO" ], [ "P00797-1", "Glycosylation of recombinant prorenin in insect cells: the insect cell line Sf9 does not express the mannose 6-phosphate recognition signal.", "Biochemistry", "1994 Jul 26", "Aeed PA, Elhammer AP", "protein_xref_pubmed", "8038170", "protein_xref_glyconnect", "513", "G14669DU" ], [ "P02787-1", "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "Glycobiology", "2000 Aug", "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "protein_xref_pubmed", "10929010", "protein_xref_glyconnect", "558", "G22768VO" ], [ "P02787-1", "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "Glycobiology", "2000 Aug", "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "protein_xref_pubmed", "10929010", "protein_xref_glyconnect", "558", "G14669DU" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G32652KI" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G30443NG" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G14994KB" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G60734PM" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G47681UP" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G71814NS" ], [ "P00740-1", "Structural analysis of N-linked sugar chains of human blood clotting factor IX.", "Journal of biochemistry", "2000 Aug", "Makino Y, Omichi K, Kuraya N, Ogawa H, Nishimura H, Iwanaga S, Hase S", "protein_xref_pubmed", "10920251", "protein_xref_glyconnect", "96", "G31639NG" ], [ "P00740-1", "Structural analysis of N-linked sugar chains of human blood clotting factor IX.", "Journal of biochemistry", "2000 Aug", "Makino Y, Omichi K, Kuraya N, Ogawa H, Nishimura H, Iwanaga S, Hase S", "protein_xref_pubmed", "10920251", "protein_xref_glyconnect", "96", "G52527GH" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G00031MO" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G29931IJ" ], [ "P13987-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "79", "G80218BM" ], [ "P13987-1", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "79", "G90093AU" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G49854OS" ], [ "P15289-1", "High-mannose-type oligosaccharides from human placental arylsulfatase A are core fucosylated as confirmed by MALDI MS.", "Glycobiology", "2000 Jun", "Hoja-Lukowicz D, Ciolczyk D, Bergquist J, Litynska A, Laidler P", "protein_xref_pubmed", "10814696", "protein_xref_glyconnect", "61", "G08790WV" ], [ "P15289-1", "High-mannose-type oligosaccharides from human placental arylsulfatase A are core fucosylated as confirmed by MALDI MS.", "Glycobiology", "2000 Jun", "Hoja-Lukowicz D, Ciolczyk D, Bergquist J, Litynska A, Laidler P", "protein_xref_pubmed", "10814696", "protein_xref_glyconnect", "61", "G51895WL" ], [ "P07498-1", "Chemical structure of neutral sugar chains isolated from human mature milk kappa-casein.", "Biochimica et biophysica acta", "1988 Feb 17", "Saito T, Itoh T, Adachi S", "protein_xref_pubmed", "3342257", "protein_xref_glyconnect", "308", "G37653KL" ], [ "P0DTE8-1", "Structural studies of the sugar chains of human parotid alpha-amylase.", "The Journal of biological chemistry", "1980 Jun 25", "Yamashita K, Tachibana Y, Nakayama T, Kitamura M, Endo Y, Kobata A", "protein_xref_pubmed", "6155378", "protein_xref_glyconnect", "28", "G52880ZN" ], [ "P0DTE8-1", "Structural studies of the sugar chains of human parotid alpha-amylase.", "The Journal of biological chemistry", "1980 Jun 25", "Yamashita K, Tachibana Y, Nakayama T, Kitamura M, Endo Y, Kobata A", "protein_xref_pubmed", "6155378", "protein_xref_glyconnect", "28", "G25451PN" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G26700PN" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G46687AB" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G77447DK" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G93656SY" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G41929NX" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G11629QQ" ], [ "P01011-1", "Structure determination of the glycans of human-serum alpha 1-antichymotrypsin using 1H-NMR spectroscopy and deglycosylation by N-glycanase.", "European journal of biochemistry", "1991 Apr 10", "Laine A, Hachulla E, Strecker G, Michalski JC, Wieruszeski JM", "protein_xref_pubmed", "2015821", "protein_xref_glyconnect", "19", "G66282NU" ], [ "P01011-1", "Structure determination of the glycans of human-serum alpha 1-antichymotrypsin using 1H-NMR spectroscopy and deglycosylation by N-glycanase.", "European journal of biochemistry", "1991 Apr 10", "Laine A, Hachulla E, Strecker G, Michalski JC, Wieruszeski JM", "protein_xref_pubmed", "2015821", "protein_xref_glyconnect", "19", "G52527GH" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G65124UZ" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G60145BJ" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G46748BU" ], [ "P00451-1", "Elucidation of N-linked oligosaccharide structures of recombinant human factor VIII using fluorophore-assisted carbohydrate electrophoresis.", "Biotechnology and applied biochemistry", "1996 Dec", "Kumar HP, Hague C, Haley T, Starr CM, Besman MJ, Lundblad RL, Baker D", "protein_xref_pubmed", "8969451", "protein_xref_glyconnect", "99", "G43947VZ" ], [ "P00451-1", "Elucidation of N-linked oligosaccharide structures of recombinant human factor VIII using fluorophore-assisted carbohydrate electrophoresis.", "Biotechnology and applied biochemistry", "1996 Dec", "Kumar HP, Hague C, Haley T, Starr CM, Besman MJ, Lundblad RL, Baker D", "protein_xref_pubmed", "8969451", "protein_xref_glyconnect", "99", "G05724UK" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G01614ZM" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G81006GJ" ], [ "P00451-1", "Elucidation of N-linked oligosaccharide structures of recombinant human factor VIII using fluorophore-assisted carbohydrate electrophoresis.", "Biotechnology and applied biochemistry", "1996 Dec", "Kumar HP, Hague C, Haley T, Starr CM, Besman MJ, Lundblad RL, Baker D", "protein_xref_pubmed", "8969451", "protein_xref_glyconnect", "99", "G45841FE" ] ] }, "readme": "Name\n - Human Proteoform Citations (GlyConnect)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-04-28T10:49:06.505148\n\nModified on\n - 2020-04-28T11:15:58.774004\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_glyconnect.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_glycosylation_glyconnect.csv\n Name: human_proteoform_citations_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_glyconnect.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_citations_glycosylation_glyconnect.csv" }