{
    "bcoid": "GLY_000447",
    "title": "SARS-CoV1 UniProtKB Xref NCBI Gene",
    "description": "The SARS coronavirus (SARS-CoV-1) UniProtKB Xref NCBI Gene dataset contains sarscov1 [taxid:694009] UniProtKB ...",
    "filename": "sarscov1_protein_xref_geneid.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Ncbi Gene cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "protein_xref..."
            ],
            [
                "P59594-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P59596-1",
                "protein_xref_geneid",
                "1489672",
                ""
            ],
            [
                "P59594-1",
                "protein_xref_geneid",
                "1489668",
                ""
            ],
            [
                "P59595-1",
                "protein_xref_geneid",
                "1489678",
                ""
            ],
            [
                "P59637-1",
                "protein_xref_geneid",
                "1489671",
                ""
            ],
            [
                "Q80H93-1",
                "protein_xref_geneid",
                "1489677",
                ""
            ],
            [
                "P0C6X7-1",
                "protein_xref_geneid",
                "1489680",
                ""
            ],
            [
                "P59633-1",
                "protein_xref_geneid",
                "1489670",
                ""
            ],
            [
                "P59632-1",
                "protein_xref_geneid",
                "1489669",
                ""
            ],
            [
                "P59636-1",
                "protein_xref_geneid",
                "1489679",
                ""
            ],
            [
                "P59635-1",
                "protein_xref_geneid",
                "1489674",
                ""
            ],
            [
                "P59634-1",
                "protein_xref_geneid",
                "1489673",
                ""
            ],
            [
                "Q7TFA1-1",
                "protein_xref_geneid",
                "1489675",
                ""
            ],
            [
                "Q7TFA0-1",
                "protein_xref_geneid",
                "1489676",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 UniProtKB Xref NCBI Gene\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-04-03T12:15:30.637510\n\nModified on\n   - 2020-04-09T18:50:59.126807\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) UniProtKB Xref NCBI Gene dataset contains sarscov1 [taxid:694009] UniProtKB canonical accessions cross-referenced to NCBI Gene database accessions/identifiers.  The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.\n\nDescription Domain\n   Keywords\n   - gene id\n   - NCBI gene\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI Gene database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov1_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/sarscov1_protein_masterlist.csv\n      Name: uniprot-proteome-human-sars-coronavirus.nt\n      URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-sars-coronavirus.nt\n   Output Subdomain\n      Name: sarscov1_protein_xref_geneid.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_xref_geneid.csv\n      Name: sarscov1_protein_xref_geneid.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_xref_geneid.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/sarscov1_protein_xref_geneid.csv"
}