{ "bcoid": "GLY_000390", "title": "Rat Gene Symbols (UniProtKB)", "description": "The Rat Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for rat [taxid:10116] ...", "filename": "rat_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Gene Symbols", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB44-1...", "Zfp324..." ], [ "D3ZXJ3-1...", "Zfp78..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "D3ZB44-1", "Zfp324", "", "rCG_27445" ], [ "D3ZXJ3-1", "Zfp78", "", "" ], [ "Q64627-1", "Neu2", "", "" ], [ "D3ZB48-1", "Hook1", "Hook1_predicted", "rCG_53392" ], [ "Q5RJZ1-1", "Rtel1", "RTEL1", "" ], [ "Q04462-1", "Vars", "Vars1", "" ], [ "P11980-1", "Pkm", "", "" ], [ "Q9WVK3-1", "Pecr", "", "" ], [ "A0A0G2JVG5-1", "LOC102552378", "", "" ], [ "P30938-1", "Sstr5", "", "" ], [ "A0A0G2JVG8-1", "Olr410", "", "" ], [ "Q07969-1", "Cd36", "Fat", "" ], [ "A0A096MJY8-1", "Acat2l1", "RGD1562948", "" ], [ "Q9QYG8-1", "Uck2", "", "" ], [ "A0A096MJY4-1", "Mef2c", "", "" ], [ "B2GV58-1", "Lsm14a", "", "" ], [ "A0A0G2JTB2-1", "Gbe1", "", "" ], [ "A0A096MJY1-1", "Gpc6", "RGD1563063_predicted", "rCG_36982" ], [ "A0A0G2KA92-1", "Chd2", "", "" ], [ "P56558-1", "Ogt", "", "" ], [ "A0A096MJY2-1", "Stoml3", "Stoml3_predicted", "rCG_49955" ], [ "F7ES73-1", "Nub1", "", "" ], [ "P01946-1", "Hba1", "Hba-a1", "" ], [ "Q63358-1", "Myo9b", "myo9b", "" ], [ "P30937-1", "Sstr4", "", "" ], [ "O35152-1", "Bet1l", "Gs15", "" ], [ "P30936-1", "Sstr3", "", "" ], [ "O35158-1", "Cdon", "Cdo", "" ], [ "Q9QYH1-1", "Mpp4", "Dlg6", "" ], [ "P02764-1", "Orm1", "", "" ], [ "P02767-1", "Ttr", "Tt", "" ], [ "D4A4W8-1", "Tbxt", "T_predicted", "rCG_44967" ], [ "D4A4W0-1", "Olr338", "Olr338_predicted", "rCG_48584" ], [ "D4A4W1-1", "Fam174b", "", "" ], [ "D4A4W2-1", "Slc47a2", "", "" ], [ "F7EN52-1", "Cyp46a1", "", "" ], [ "D4A4W4-1", "Ephx3", "Abhd9_predicted", "rCG_29258" ], [ "D4A4W5-1", "Atp10b", "", "" ], [ "D4A4W6-1", "Slirp", "", "rCG_20695" ], [ "D4A4W7-1", "Mgarp", "", "rCG_50000" ], [ "G3V6I3-1", "Cwc25", "Ccdc49_predicted", "rCG_33263" ], [ "P21932-1", "Adcy3", "", "rCG_61588" ], [ "Q8K4K5-1", "Llgl1", "", "rCG_33798" ], [ "Q4L0E8-1", "Rgs18", "", "rCG_46511" ], [ "G3V6I6-1", "Adipor1", "", "rCG_46155" ], [ "A0A0G2K5E4-1", "Dnaja3", "", "" ], [ "G3V6I4-1", "Marc1", "", "rCG_20363" ], [ "P12749-1", "Rpl26", "", "rCG_33968" ], [ "O08812-1", "Slc7a3", "", "rCG_36274" ], [ "Q767I8-1", "Pcdha4", "", "" ], [ "P39020-1", "Meox2", "Gax", "" ], [ "P39020-1", "Meox2", "Mox-2", "" ], [ "P39020-1", "Meox2", "Mox2", "" ], [ "Q0HA29-1", "Nmnat2", "", "" ], [ "A0A0G2K0T8-1", "Fam25a", "", "rCG_42313" ], [ "Q6P6Q9-1", "Micu1", "", "" ], [ "Q63544-1", "Sncg", "", "rCG_42336" ], [ "A0A0G2K0T7-1", "Zfp35", "", "" ], [ "P28648-1", "Cd63", "", "" ], [ "Q5U1W2-1", "Prr13", "", "" ], [ "D4A2D6-1", "Slfn2", "", "" ], [ "P01237-1", "Prl", "", "" ], [ "Q4KLI1-1", "Zkscan1", "", "" ], [ "P01230-1", "Lhb", "", "" ], [ "M0RB72-1", "Prr15l", "LOC688163", "rCG_34095" ], [ "P09006-1", "Serpina3n", "Spin2c", "" ], [ "D4A781-1", "Ipo5", "", "" ], [ "M0RB75-1", "Kdm4b", "", "rCG_45102" ], [ "A0A0G2K8D0-1", "RGD1559482", "", "" ], [ "F1M9D8-1", "Gask1a", "Fam198a", "" ], [ "Q9JHY8-1", "Lig1", "", "" ], [ "Q9JHY1-1", "F11r", "Jam1", "" ], [ "Q9JHY2-1", "Sfxn3", "", "" ], [ "Q9JHY7-1", "Birc5", "", "" ], [ "Q9EQZ1-1", "Tsc22d3", "Dsipi", "" ], [ "Q9EQZ1-1", "Tsc22d3", "Gilz", "" ], [ "F1MAA4-1", "Atp13a2", "", "" ], [ "Q02874-1", "Macroh2a1", "H2afy", "" ], [ "Q05474-1", "Fau", "", "" ], [ "P54690-1", "Bcat1", "Bcatc", "rCG_29894" ], [ "Q99JD4-1", "Clasp2", "", "" ], [ "Q99JD1-1", "Defb22", "LOC171412", "rCG_37397" ], [ "P07727-1", "Glra1", "", "" ], [ "Q99JD3-1", "Slc25a21", "Odc", "" ] ] }, "readme": "Name\n - Rat Gene Symbols (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-15T12:52:59.660127\n\nModified on\n - 2020-04-10T12:19:10.137424\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for rat [taxid:10116] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_genenames_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_genenames_uniprotkb.csv\n Name: rat_protein_genenames_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_genenames_uniprotkb.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_genenames_uniprotkb.csv" }