{
    "bcoid": "GLY_000373",
    "title": "HCV1b UniProtKB Xref PDB",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) UniProtKB Xref PDB contains hcv1b [taxid:11116] ...",
    "filename": "hcv1b_protein_xref_pdb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1b, isolate Japanese)",
        "molecule": "Protein",
        "tags": "Pdb cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "protein_xref..."
            ],
            [
                "P26662-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "3P8O",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4KTC",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "1W3C",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4I31",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "1DY8",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4A1V",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4I33",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "3OYP",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "1DXP",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4A1T",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4I32",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "2K8J",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4JMY",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "3P8N",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "1DY9",
                ""
            ],
            [
                "P26662-1",
                "protein_xref_pdb",
                "4A1X",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1b UniProtKB Xref PDB\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-03-14T17:42:17.307133\n\nModified on\n   - 2020-04-09T18:09:19.836070\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) UniProtKB Xref PDB contains hcv1b [taxid:11116] UniProtKB canonical accessions cross-referenced to PDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The Protein Data Bank is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids.\n\nDescription Domain\n   Keywords\n   - protein 3D structure\n   - RCSB PDB\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to RCSB PDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1b_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/hcv1b_protein_masterlist.csv\n      Name: uniprot-proteome-11116-homo-sapiens-2019-05.nt\n      URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n   Output Subdomain\n      Name: hcv1b_protein_xref_pdb.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1b_protein_xref_pdb.csv\n      Name: hcv1b_protein_xref_pdb.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1b_protein_xref_pdb.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/hcv1b_protein_xref_pdb.csv"
}