{ "bcoid": "GLY_000329", "title": "Human Glycosylation Sites (GlyConnect) ", "description": "The Human Glycosylation Sites (GlyConnect) dataset contains human [taxid:9606] UniProtKB canonical accessions ...", "filename": "human_proteoform_glycosylation_sites_glyconnect.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P19835-1...", "..." ], [ "P19835-1...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "protein_id" }, { "type": "string", "label": "taxonomy_taxonomy_id" }, { "type": "string", "label": "taxonomy_species" }, { "type": "string", "label": "structure_id" }, { "type": "string", "label": "structure_glytoucan_id" }, { "type": "string", "label": "structure_glycan_core" }, { "type": "string", "label": "structure_glycan_type" }, { "type": "string", "label": "composition_format_numeric" }, { "type": "string", "label": "composition_format_condensed" }, { "type": "string", "label": "composition_format_byonic" }, { "type": "string", "label": "composition_mass_monoisotopic" }, { "type": "string", "label": "composition_mass" }, { "type": "string", "label": "composition_format_glyconnect" }, { "type": "string", "label": "composition_glytoucan_id" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "source_tissue_uberon_id" }, { "type": "string", "label": "source_cell_line_id" }, { "type": "string", "label": "source_cell_line_name" }, { "type": "string", "label": "source_cell_line_cellosaurus_id" }, { "type": "string", "label": "source_cell_component_id" }, { "type": "string", "label": "source_cell_component_go_id" }, { "type": "string", "label": "source_cell_component_name" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" } ], [ "P19835-1", "", "", "G55373ZG", "N-linked", "protein_xref_glyconnect", "74", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G44215PV", "N-linked", "protein_xref_glyconnect", "74", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G55373ZG", "N-linked", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G44215PV", "N-linked", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P01588-1", "", "", "G51562OR", "N-linked", "protein_xref_glyconnect", "140", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G70894RY", "N-linked", "protein_xref_glyconnect", "140", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G51562OR", "N-linked", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G70894RY", "N-linked", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G51562OR", "N-linked", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G70894RY", "N-linked", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G51562OR", "N-linked", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P01588-1", "", "", "G70894RY", "N-linked", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "140", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P10646-1", "", "", "G51562OR", "N-linked", "protein_xref_glyconnect", "602", "protein_xref_glyconnect", "602", "602", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P10646-1", "", "", "G70894RY", "N-linked", "protein_xref_glyconnect", "602", "protein_xref_glyconnect", "602", "602", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P10646-1", "", "", "G51562OR", "N-linked", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "602", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P10646-1", "", "", "G70894RY", "N-linked", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "602", "9606", "Homo sapiens", "1", "G51562OR", "Complex", "N-Linked", "9,8,1,0,0,0,0,0,0,0,0,0,0,0", "H9N8F1", "HexNAc(8)Hex(9)dHex(1)", "3247.1789", "3248.9999", "Hex:9 HexNAc:8 dHex:1", "G70894RY", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P17050-1", "", "", "G22768VO", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G14669DU", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P56817-1", "", "", "G22768VO", "N-linked", "protein_xref_glyconnect", "71", "protein_xref_glyconnect", "71", "71", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ], [ "P56817-1", "", "", "G14669DU", "N-linked", "protein_xref_glyconnect", "71", "protein_xref_glyconnect", "71", "71", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ], [ "P56817-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "71", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ], [ "P56817-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "71", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ], [ "P14780-1", "", "", "G74038AG", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "159", "G74038AG", "Core 2", "O-Linked", "3,3,1,0,0,0,0,0,0,0,0,0,0,0", "H3N3F1", "HexNAc(3)Hex(3)dHex(1)", "1259.4651", "1260.1705", "Hex:3 HexNAc:3 dHex:1", "G94854LT", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G94854LT", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "159", "G74038AG", "Core 2", "O-Linked", "3,3,1,0,0,0,0,0,0,0,0,0,0,0", "H3N3F1", "HexNAc(3)Hex(3)dHex(1)", "1259.4651", "1260.1705", "Hex:3 HexNAc:3 dHex:1", "G94854LT", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G74038AG", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "159", "G74038AG", "Core 2", "O-Linked", "3,3,1,0,0,0,0,0,0,0,0,0,0,0", "H3N3F1", "HexNAc(3)Hex(3)dHex(1)", "1259.4651", "1260.1705", "Hex:3 HexNAc:3 dHex:1", "G94854LT", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G94854LT", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "159", "G74038AG", "Core 2", "O-Linked", "3,3,1,0,0,0,0,0,0,0,0,0,0,0", "H3N3F1", "HexNAc(3)Hex(3)dHex(1)", "1259.4651", "1260.1705", "Hex:3 HexNAc:3 dHex:1", "G94854LT", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G81541IU", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "188", "G81541IU", "Core 2", "O-Linked", "2,2,0,2,0,0,0,0,0,0,0,0,0,0", "H2N2S2", "HexNAc(2)Hex(2)NeuAc(2)", "1330.4658", "1331.2059", "Hex:2 HexNAc:2 NeuAc:2", "", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G81541IU", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "188", "G81541IU", "Core 2", "O-Linked", "2,2,0,2,0,0,0,0,0,0,0,0,0,0", "H2N2S2", "HexNAc(2)Hex(2)NeuAc(2)", "1330.4658", "1331.2059", "Hex:2 HexNAc:2 NeuAc:2", "", "", "", "", "", "", "", "", "", "", "", "" ], [ "P04275-1", "", "", "G47175EF", "N-linked", "protein_xref_glyconnect", "627", "protein_xref_glyconnect", "627", "627", "9606", "Homo sapiens", "2", "G47175EF", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "219", "Blood Plasma", "UBERON_0001969", "", "", "", "", "", "", "", "" ], [ "P04275-1", "", "", "G44215PV", "N-linked", "protein_xref_glyconnect", "627", "protein_xref_glyconnect", "627", "627", "9606", "Homo sapiens", "2", "G47175EF", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "219", "Blood Plasma", "UBERON_0001969", "", "", "", "", "", "", "", "" ], [ "P04275-1", "", "", "G47175EF", "N-linked", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "627", "9606", "Homo sapiens", "2", "G47175EF", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "219", "Blood Plasma", "UBERON_0001969", "", "", "", "", "", "", "", "" ], [ "P04275-1", "", "", "G44215PV", "N-linked", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "627", "9606", "Homo sapiens", "2", "G47175EF", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "219", "Blood Plasma", "UBERON_0001969", "", "", "", "", "", "", "", "" ], [ "P19652-1", "", "", "G88555GL", "N-linked", "protein_xref_glyconnect", "14", "protein_xref_glyconnect", "14", "14", "9606", "Homo sapiens", "30", "G88555GL", "Complex", "N-Linked", "8,7,2,0,0,0,0,0,0,0,0,0,0,0", "H8N7F2", "HexNAc(7)Hex(8)dHex(2)", "3028.1046", "3029.8055", "Hex:8 HexNAc:7 dHex:2", "G88756OE", "227", "Blood Serum", "UBERON_0001977", "", "", "", "", "", "", "", "" ], [ "P19652-1", "", "", "G88756OE", "N-linked", "protein_xref_glyconnect", "14", "protein_xref_glyconnect", "14", "14", "9606", "Homo sapiens", "30", "G88555GL", "Complex", "N-Linked", "8,7,2,0,0,0,0,0,0,0,0,0,0,0", "H8N7F2", "HexNAc(7)Hex(8)dHex(2)", "3028.1046", "3029.8055", "Hex:8 HexNAc:7 dHex:2", "G88756OE", "227", "Blood Serum", "UBERON_0001977", "", "", "", "", "", "", "", "" ], [ "P19652-1", "", "", "G88555GL", "N-linked", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "14", "9606", "Homo sapiens", "30", "G88555GL", "Complex", "N-Linked", "8,7,2,0,0,0,0,0,0,0,0,0,0,0", "H8N7F2", "HexNAc(7)Hex(8)dHex(2)", "3028.1046", "3029.8055", "Hex:8 HexNAc:7 dHex:2", "G88756OE", "227", "Blood Serum", "UBERON_0001977", "", "", "", "", "", "", "", "" ], [ "P19652-1", "", "", "G88756OE", "N-linked", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "14", "9606", "Homo sapiens", "30", "G88555GL", "Complex", "N-Linked", "8,7,2,0,0,0,0,0,0,0,0,0,0,0", "H8N7F2", "HexNAc(7)Hex(8)dHex(2)", "3028.1046", "3029.8055", "Hex:8 HexNAc:7 dHex:2", "G88756OE", "227", "Blood Serum", "UBERON_0001977", "", "", "", "", "", "", "", "" ], [ "P14151-1", "", "", "G55373ZG", "N-linked", "protein_xref_glyconnect", "346", "protein_xref_glyconnect", "346", "346", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P14151-1", "", "", "G44215PV", "N-linked", "protein_xref_glyconnect", "346", "protein_xref_glyconnect", "346", "346", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P14151-1", "", "", "G55373ZG", "N-linked", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "346", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P14151-1", "", "", "G44215PV", "N-linked", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "346", "9606", "Homo sapiens", "4", "G55373ZG", "Complex", "N-Linked", "5,4,2,0,0,0,0,0,0,0,0,0,0,0", "H5N4F2", "HexNAc(4)Hex(5)dHex(2)", "1932.708", "1933.7933", "Hex:5 HexNAc:4 dHex:2", "G44215PV", "67", "Kidney", "UBERON_0002113", "48", "BHK-21", "CVCL_1914", "", "", "", "", "" ], [ "P33151-1", "", "", "G05751AZ", "N-linked", "protein_xref_glyconnect", "617", "protein_xref_glyconnect", "617", "617", "9606", "Homo sapiens", "5", "G05751AZ", "Complex", "N-Linked", "6,5,1,3,0,0,0,0,0,0,0,0,0,0", "H6N5F1S3", "HexNAc(5)Hex(6)dHex(1)NeuAc(3)", "3025.0685", "3026.7614", "Hex:6 HexNAc:5 dHex:1 NeuAc:3", "G15169WU", "363", "Umbilical Vein", "UBERON_0002066", "93", "HUVEC-C", "CVCL_2959", "", "", "", "", "" ], [ "P33151-1", "", "", "G15169WU", "N-linked", "protein_xref_glyconnect", "617", "protein_xref_glyconnect", "617", "617", "9606", "Homo sapiens", "5", "G05751AZ", "Complex", "N-Linked", "6,5,1,3,0,0,0,0,0,0,0,0,0,0", "H6N5F1S3", "HexNAc(5)Hex(6)dHex(1)NeuAc(3)", "3025.0685", "3026.7614", "Hex:6 HexNAc:5 dHex:1 NeuAc:3", "G15169WU", "363", "Umbilical Vein", "UBERON_0002066", "93", "HUVEC-C", "CVCL_2959", "", "", "", "", "" ], [ "P33151-1", "", "", "G05751AZ", "N-linked", "protein_xref_pubmed", "10460833", "protein_xref_glyconnect", "617", "617", "9606", "Homo sapiens", "5", "G05751AZ", "Complex", "N-Linked", "6,5,1,3,0,0,0,0,0,0,0,0,0,0", "H6N5F1S3", "HexNAc(5)Hex(6)dHex(1)NeuAc(3)", "3025.0685", "3026.7614", "Hex:6 HexNAc:5 dHex:1 NeuAc:3", "G15169WU", "363", "Umbilical Vein", "UBERON_0002066", "93", "HUVEC-C", "CVCL_2959", "", "", "", "", "" ], [ "P33151-1", "", "", "G15169WU", "N-linked", "protein_xref_pubmed", "10460833", "protein_xref_glyconnect", "617", "617", "9606", "Homo sapiens", "5", "G05751AZ", "Complex", "N-Linked", "6,5,1,3,0,0,0,0,0,0,0,0,0,0", "H6N5F1S3", "HexNAc(5)Hex(6)dHex(1)NeuAc(3)", "3025.0685", "3026.7614", "Hex:6 HexNAc:5 dHex:1 NeuAc:3", "G15169WU", "363", "Umbilical Vein", "UBERON_0002066", "93", "HUVEC-C", "CVCL_2959", "", "", "", "", "" ], [ "P14780-1", "", "", "G53435KM", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "535", "G53435KM", "Core 2", "O-Linked", "3,3,1,1,0,0,0,0,0,0,0,0,0,0", "H3N3F1S1", "HexNAc(3)Hex(3)dHex(1)NeuAc(1)", "1550.5605", "1551.4284", "Hex:3 HexNAc:3 dHex:1 NeuAc:1", "", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G53435KM", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "535", "G53435KM", "Core 2", "O-Linked", "3,3,1,1,0,0,0,0,0,0,0,0,0,0", "H3N3F1S1", "HexNAc(3)Hex(3)dHex(1)NeuAc(1)", "1550.5605", "1551.4284", "Hex:3 HexNAc:3 dHex:1 NeuAc:1", "", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G63794QO", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "695", "G63794QO", "Core 2", "O-Linked", "4,4,0,1,0,0,0,0,0,0,0,0,0,0", "H4N4S1", "HexNAc(4)Hex(4)NeuAc(1)", "1769.6348", "1770.6228", "Hex:4 HexNAc:4 NeuAc:1", "G31916IQ", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G31916IQ", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "695", "G63794QO", "Core 2", "O-Linked", "4,4,0,1,0,0,0,0,0,0,0,0,0,0", "H4N4S1", "HexNAc(4)Hex(4)NeuAc(1)", "1769.6348", "1770.6228", "Hex:4 HexNAc:4 NeuAc:1", "G31916IQ", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G63794QO", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "695", "G63794QO", "Core 2", "O-Linked", "4,4,0,1,0,0,0,0,0,0,0,0,0,0", "H4N4S1", "HexNAc(4)Hex(4)NeuAc(1)", "1769.6348", "1770.6228", "Hex:4 HexNAc:4 NeuAc:1", "G31916IQ", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G31916IQ", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "695", "G63794QO", "Core 2", "O-Linked", "4,4,0,1,0,0,0,0,0,0,0,0,0,0", "H4N4S1", "HexNAc(4)Hex(4)NeuAc(1)", "1769.6348", "1770.6228", "Hex:4 HexNAc:4 NeuAc:1", "G31916IQ", "", "", "", "", "", "", "", "", "", "", "" ], [ "P17050-1", "", "", "G16828VN", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G72735IY", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G16828VN", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G72735IY", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P19835-1", "", "", "G16828VN", "N-linked", "protein_xref_glyconnect", "74", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G72735IY", "N-linked", "protein_xref_glyconnect", "74", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G16828VN", "N-linked", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P19835-1", "", "", "G72735IY", "N-linked", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "74", "9606", "Homo sapiens", "70", "G16828VN", "Hybrid", "N-Linked", "6,3,0,0,0,0,0,0,0,0,0,0,0,0", "H6N3", "HexNAc(3)Hex(6)", "1599.5656", "1600.4547", "Hex:6 HexNAc:3", "G72735IY", "119", "Pancreas", "UBERON_0001264", "", "", "", "", "", "", "", "" ], [ "P04114-1", "", "", "G04689DA", "N-linked", "protein_xref_glyconnect", "57", "protein_xref_glyconnect", "57", "57", "9606", "Homo sapiens", "88", "G04689DA", "High-Mannose", "N-Linked", "7,2,0,0,0,0,0,0,0,0,0,0,0,0", "H7N2", "HexNAc(2)Hex(7)", "1558.539", "1559.4021", "Hex:7 HexNAc:2", "G05724UK", "", "", "", "", "", "", "12", "GO_0034362", "Low-Density Lipoprotein Particle", "", "" ], [ "P04114-1", "", "", "G05724UK", "N-linked", "protein_xref_glyconnect", "57", "protein_xref_glyconnect", "57", "57", "9606", "Homo sapiens", "88", "G04689DA", "High-Mannose", "N-Linked", "7,2,0,0,0,0,0,0,0,0,0,0,0,0", "H7N2", "HexNAc(2)Hex(7)", "1558.539", "1559.4021", "Hex:7 HexNAc:2", "G05724UK", "", "", "", "", "", "", "12", "GO_0034362", "Low-Density Lipoprotein Particle", "", "" ], [ "P04114-1", "", "", "G04689DA", "N-linked", "protein_xref_pubmed", "4043085", "protein_xref_glyconnect", "57", "57", "9606", "Homo sapiens", "88", "G04689DA", "High-Mannose", "N-Linked", "7,2,0,0,0,0,0,0,0,0,0,0,0,0", "H7N2", "HexNAc(2)Hex(7)", "1558.539", "1559.4021", "Hex:7 HexNAc:2", "G05724UK", "", "", "", "", "", "", "12", "GO_0034362", "Low-Density Lipoprotein Particle", "", "" ], [ "P04114-1", "", "", "G05724UK", "N-linked", "protein_xref_pubmed", "4043085", "protein_xref_glyconnect", "57", "57", "9606", "Homo sapiens", "88", "G04689DA", "High-Mannose", "N-Linked", "7,2,0,0,0,0,0,0,0,0,0,0,0,0", "H7N2", "HexNAc(2)Hex(7)", "1558.539", "1559.4021", "Hex:7 HexNAc:2", "G05724UK", "", "", "", "", "", "", "12", "GO_0034362", "Low-Density Lipoprotein Particle", "", "" ], [ "P14780-1", "", "", "G65562ZE", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "978", "G65562ZE", "Core 1", "O-Linked", "1,1,0,1,0,0,0,0,0,0,0,0,0,0", "H1N1S1", "HexNAc(1)Hex(1)NeuAc(1)", "674.2382", "674.6106", "Hex:1 HexNAc:1 NeuAc:1", "G74722FL", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G74722FL", "O-linked", "protein_xref_glyconnect", "6", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "978", "G65562ZE", "Core 1", "O-Linked", "1,1,0,1,0,0,0,0,0,0,0,0,0,0", "H1N1S1", "HexNAc(1)Hex(1)NeuAc(1)", "674.2382", "674.6106", "Hex:1 HexNAc:1 NeuAc:1", "G74722FL", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G65562ZE", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "978", "G65562ZE", "Core 1", "O-Linked", "1,1,0,1,0,0,0,0,0,0,0,0,0,0", "H1N1S1", "HexNAc(1)Hex(1)NeuAc(1)", "674.2382", "674.6106", "Hex:1 HexNAc:1 NeuAc:1", "G74722FL", "", "", "", "", "", "", "", "", "", "", "" ], [ "P14780-1", "", "", "G74722FL", "O-linked", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "6", "9606", "Homo sapiens", "978", "G65562ZE", "Core 1", "O-Linked", "1,1,0,1,0,0,0,0,0,0,0,0,0,0", "H1N1S1", "HexNAc(1)Hex(1)NeuAc(1)", "674.2382", "674.6106", "Hex:1 HexNAc:1 NeuAc:1", "G74722FL", "", "", "", "", "", "", "", "", "", "", "" ], [ "P17050-1", "", "", "G45546UR", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "105", "G45546UR", "Complex", "N-Linked", "7,6,1,1,0,0,0,0,0,0,0,0,0,0", "H7N6F1S1", "HexNAc(6)Hex(7)dHex(1)NeuAc(1)", "2808.0099", "2809.583", "Hex:7 HexNAc:6 dHex:1 NeuAc:1", "G34617SM", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G34617SM", "N-linked", "protein_xref_glyconnect", "45", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "105", "G45546UR", "Complex", "N-Linked", "7,6,1,1,0,0,0,0,0,0,0,0,0,0", "H7N6F1S1", "HexNAc(6)Hex(7)dHex(1)NeuAc(1)", "2808.0099", "2809.583", "Hex:7 HexNAc:6 dHex:1 NeuAc:1", "G34617SM", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G45546UR", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "105", "G45546UR", "Complex", "N-Linked", "7,6,1,1,0,0,0,0,0,0,0,0,0,0", "H7N6F1S1", "HexNAc(6)Hex(7)dHex(1)NeuAc(1)", "2808.0099", "2809.583", "Hex:7 HexNAc:6 dHex:1 NeuAc:1", "G34617SM", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P17050-1", "", "", "G34617SM", "N-linked", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "45", "9606", "Homo sapiens", "105", "G45546UR", "Complex", "N-Linked", "7,6,1,1,0,0,0,0,0,0,0,0,0,0", "H7N6F1S1", "HexNAc(6)Hex(7)dHex(1)NeuAc(1)", "2808.0099", "2809.583", "Hex:7 HexNAc:6 dHex:1 NeuAc:1", "G34617SM", "145", "Ovary", "UBERON_0000992", "38", "CHO-DG44", "CVCL_7180", "", "", "", "", "" ], [ "P00747-1", "", "", "G22768VO", "N-linked", "protein_xref_glyconnect", "502", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G14669DU", "N-linked", "protein_xref_glyconnect", "502", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "1899031", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "1899031", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "2059624", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "2059624", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "2386787", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "2386787", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G22768VO", "N-linked", "protein_xref_pubmed", "2065054", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00747-1", "", "", "G14669DU", "N-linked", "protein_xref_pubmed", "2065054", "protein_xref_glyconnect", "502", "502", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "89", "CHO", "CVCL_0213", "", "", "", "", "" ], [ "P00797-1", "", "", "G22768VO", "N-linked", "protein_xref_glyconnect", "513", "protein_xref_glyconnect", "513", "513", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ], [ "P00797-1", "", "", "G14669DU", "N-linked", "protein_xref_glyconnect", "513", "protein_xref_glyconnect", "513", "513", "9606", "Homo sapiens", "11", "G22768VO", "Pauci-Mannose", "N-Linked", "3,2,0,0,0,0,0,0,0,0,0,0,0,0", "H3N2", "HexNAc(2)Hex(3)", "910.3278", "910.8325", "Hex:3 HexNAc:2", "G14669DU", "145", "Ovary", "UBERON_0000992", "92", "Sf9", "CVCL_0549", "", "", "", "", "" ] ] }, "readme": "Name\n - Human Glycosylation Sites (GlyConnect) \n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-02-10T10:16:50.152756\n\nModified on\n - 2020-08-19T13:57:36.415562\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Human Glycosylation Sites (GlyConnect) dataset contains human [taxid:9606] UniProtKB canonical accessions with information on reported glycosylation sites in GlyConnect database (https://glyconnect.expasy.org/; PMID: 30574787).A json file was derived through GlyConnect API (https://glyconnect.expasy.org/api/docs/index.html?url=/api/assets/swagger.json#/Glycosylation/listGlycosylationsAsJson) (Query: taxonomy:Homo sapiens). If you use this dataset please provide proper attribution to GlyConnect and GlyGen.\n\nDescription Domain\n Keywords\n - glycosylation\n - reported glycosylation\n\n Pipeline Steps\n - Step-1: The script loads the glycosylation information from the input JSON file and extracts the data. The QC checks filter out: 1) any rows where the UniProtKB accession is not included in the GlyGen protein list (https://data.glygen.org/GLYDS000001) and/or 2) if the given glycosylation position and amino acid does not match to the amino acid on the .fasta sequence provided in the 2019-09 UniProtKB release for that protein (However it does pass if the amino acid +glyco-site is empty (as these records correspond to the \"not reported\" glyco-sites and/or 3) If the glycosylation type does not associate to the glycostlation based on amino acid (i.e if a N-linked is associated with Ser/Thr residue, etc). 4) If the glyco-site is not reported and the glycosylation type is ambigious (c-Linked/o-linked) and/or 5) if the saccharide (GlyTouCan) is not present in the GlyGen glycan masterlist. All the flagged entries are added in the log file (human_proteoform_glycosylation_sites_glyconnect.1.log)\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glyconnect_human_2020_06_08_10_37_47.json\n URI: https://data.glygen.org//ln2downloads/glyconnect/07_16_2021/glyconnect_human_2020_06_08_10_37_47.json\n Name: glygen_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/glycan_masterlist.csv\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Name: human_protein_canonicalsequences.fasta\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_canonicalsequences.fasta\n Output Subdomain\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.1.log\n URI: https://data.glygen.org/ln2wwwdata/logs/human_proteoform_glycosylation_sites_glyconnect.1.log\n Name: human_proteoform_glycosylation_sites_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_glycosylation_sites_glyconnect.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv" }