{ "bcoid": "GLY_000314", "title": "Mouse Protein Binary Interactions (IntAct)", "description": "The Mouse Protein Binary Interaction (IntAct) dataset contains mouse [taxid:10116] binary interaction ...", "filename": "mouse_protein_binary_interactions.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Binary Interaction", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9JKY5-1...", "EBI-642457..." ], [ "Q9JKY5-1...", "EBI-642457..." ] ], "headers": [ "uniprotkb_ca...", "intact_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "intact_ac" }, { "type": "string", "label": "participant_uniprotkb_ac" }, { "type": "string", "label": "participant_intact_ac" }, { "type": "string", "label": "participant_uniprotkb_id" }, { "type": "string", "label": "participant_gene_symbol" }, { "type": "string", "label": "participant_taxid" }, { "type": "string", "label": "experiments" } ], [ "Q9JKY5-1", "EBI-642457", "Q9JKY5", "EBI-642457", "HIP1R_MOUSE", "Hip1r", "10090", "4" ], [ "Q9JKY5-1", "EBI-642457", "Q60598", "EBI-397955", "SRC8_MOUSE", "Cttn", "10090", "4" ], [ "Q9JKY5-1", "EBI-642457", "Q9JKY5", "EBI-642457", "HIP1R_MOUSE", "Hip1r", "10090", "3" ], [ "Q9JKY5-1", "EBI-642457", "Q96B97", "EBI-346595", "SH3K1_HUMAN", "SH3KBP1", "9606", "3" ], [ "P10493-1", "EBI-1032117", "P02468", "EBI-7059830", "LAMC1_MOUSE", "Lamc1", "10090", "5" ], [ "P10493-1", "EBI-1032117", "P10493", "EBI-1032117", "NID1_MOUSE", "Nid1", "10090", "5" ], [ "Q9D1X0-1", "EBI-913097", "Q6PFR5", "EBI-913075", "TRA2A_MOUSE", "Tra2a", "10090", "4" ], [ "Q9D1X0-1", "EBI-913097", "Q9D1X0", "EBI-913097", "NOL3_MOUSE", "Nol3", "10090", "4" ], [ "P53566-1", "EBI-2644207", "Q6ZQ88", "EBI-1216284", "KDM1A_MOUSE", "Kdm1a", "10090", "4" ], [ "P53566-1", "EBI-2644207", "P53566", "EBI-2644207", "CEBPA_MOUSE", "Cebpa", "10090", "4" ], [ "P53566-1", "EBI-2644207", "Q9R1E0", "EBI-1371343", "FOXO1_MOUSE", "Foxo1", "10090", "5" ], [ "P53566-1", "EBI-2644207", "P53566", "EBI-2644207", "CEBPA_MOUSE", "Cebpa", "10090", "5" ], [ "Q9CXU1-1", "EBI-309355", "Q8C1S0", "EBI-398761", "MED19_MOUSE", "Med19", "10090", "2" ], [ "Q9CXU1-1", "EBI-309355", "Q9CXU1", "EBI-309355", "MED31_MOUSE", "Med31", "10090", "2" ], [ "Q07563-1", "EBI-6251005", "P08246", "EBI-986345", "ELNE_HUMAN", "ELANE", "9606", "2" ], [ "Q8CDJ3-1", "EBI-3506699", "Q8CDJ3", "EBI-3506699", "BAKOR_MOUSE", "Atg14", "10090", "2" ], [ "Q8CDJ3-1", "EBI-3506699", "P23242", "EBI-298630", "CXA1_MOUSE", "Gja1", "10090", "2" ], [ "Q8CDJ3-1", "EBI-3506699", "Q8VCQ3", "EBI-2365563", "NRBF2_MOUSE", "Nrbf2", "10090", "7" ], [ "Q8CDJ3-1", "EBI-3506699", "Q8CDJ3", "EBI-3506699", "BAKOR_MOUSE", "Atg14", "10090", "7" ], [ "Q9QXV1-1", "EBI-1216641", "P25916", "EBI-927401", "BMI1_MOUSE", "Bmi1", "10090", "3" ], [ "Q9QXV1-1", "EBI-1216641", "Q9QXV1", "EBI-1216641", "CBX8_MOUSE", "Cbx8", "10090", "5" ], [ "Q9QXV1-1", "EBI-1216641", "Q9QXV1", "EBI-1216641", "CBX8_MOUSE", "Cbx8", "10090", "3" ], [ "Q9QXV1-1", "EBI-1216641", "Q9QXV1", "EBI-1216641", "CBX8_MOUSE", "Cbx8", "10090", "2" ], [ "Q9QXV1-1", "EBI-1216641", "Q9CQJ4", "EBI-927321", "RING2_MOUSE", "Rnf2", "10090", "5" ], [ "Q9QXV1-1", "EBI-1216641", "O35730", "EBI-929310", "RING1_MOUSE", "Ring1", "10090", "2" ], [ "Q9QY53-1", "EBI-77230", "P59240", "EBI-4281265", "NPHP4_MOUSE", "Nphp4", "10090", "8" ], [ "Q9QY53-1", "EBI-77230", "Q9QY53", "EBI-77230", "NPHP1_MOUSE", "Nphp1", "10090", "8" ], [ "Q9QY53-1", "EBI-77230", "Q61140", "EBI-77088", "BCAR1_MOUSE", "Bcar1", "10090", "2" ], [ "Q9QY53-1", "EBI-77230", "Q9QY53", "EBI-77230", "NPHP1_MOUSE", "Nphp1", "10090", "2" ], [ "P84075-1", "EBI-2128343", "Q08460", "EBI-1633915", "KCMA1_MOUSE", "Kcnma1", "10090", "3" ], [ "P84075-1", "EBI-2128343", "P84075", "EBI-2128343", "HPCA_MOUSE", "Hpca", "10090", "3" ], [ "Q9WUD1-1", "EBI-773027", "Q5S007", "EBI-5323863", "LRRK2_HUMAN", "LRRK2", "9606", "2" ], [ "Q9WUD1-1", "EBI-773027", "Q9WUD1", "EBI-773027", "CHIP_MOUSE", "Stub1", "10090", "2" ], [ "Q9WUD1-1", "EBI-773027", "P61088", "EBI-1052908", "UBE2N_HUMAN", "UBE2N", "9606", "2" ], [ "Q9WUD1-1", "EBI-773027", "Q9WUD1", "EBI-773027", "CHIP_MOUSE", "Stub1", "10090", "2" ], [ "Q9WUD1-1", "EBI-773027", "O55222", "EBI-6690138", "ILK_MOUSE", "Ilk", "10090", "7" ], [ "Q9WUD1-1", "EBI-773027", "Q9WUD1", "EBI-773027", "CHIP_MOUSE", "Stub1", "10090", "7" ], [ "Q9EQZ6-1", "EBI-772212", "P01112", "EBI-350145", "RASH_HUMAN", "HRAS", "9606", "3" ], [ "Q9EQZ6-1", "EBI-772212", "P61224", "EBI-358143", "RAP1B_HUMAN", "RAP1B", "9606", "3" ], [ "P84078-1", "EBI-2308190", "Q5T5U3", "EBI-1642518", "RHG21_HUMAN", "ARHGAP21", "9606", "3" ], [ "Q9R0G6-1", "EBI-9028018", "P58397", "EBI-9028051", "ATS12_HUMAN", "ADAMTS12", "9606", "3" ], [ "O88188-1", "EBI-79494", "Q62192", "EBI-79487", "CD180_MOUSE", "Cd180", "10090", "5" ], [ "O88188-1", "EBI-79494", "O88188", "EBI-79494", "LY86_MOUSE", "Ly86", "10090", "5" ], [ "Q80W03-1", "EBI-26675915", "Q80W03", "EBI-26675915", "TOX3_MOUSE", "Tox3", "10090", "2" ], [ "Q80W03-1", "EBI-26675915", "Q8VHS6", "EBI-26675998", "ASB15_MOUSE", "Asb15", "10090", "2" ], [ "Q6PDX6-1", "EBI-2795840", "Q62141", "EBI-591450", "SIN3B_MOUSE", "Sin3b", "10090", "5" ], [ "Q6PDX6-1", "EBI-2795840", "Q6PDX6", "EBI-2795840", "RN220_MOUSE", "Rnf220", "10090", "5" ], [ "O55042-1", "EBI-2310271", "Q61327", "EBI-7839708", "SC6A3_MOUSE", "Slc6a3", "10090", "5" ], [ "O55042-1", "EBI-2310271", "O55042", "EBI-2310271", "SYUA_MOUSE", "Snca", "10090", "5" ], [ "O55042-1", "EBI-2310271", "P55258", "EBI-398411", "RAB8A_MOUSE", "Rab8a", "10090", "2" ], [ "O55042-1", "EBI-2310271", "O55042", "EBI-2310271", "SYUA_MOUSE", "Snca", "10090", "2" ], [ "P31809-1", "EBI-25747689", "P11224", "EBI-16196052", "SPIKE_CVMA5", "S", "11142", "2" ], [ "Q61539-1", "EBI-2312731", "Q61539", "EBI-2312731", "ERR2_MOUSE", "Esrrb", "10090", "2" ], [ "Q61539-1", "EBI-2312731", "Q16665", "EBI-447269", "HIF1A_HUMAN", "HIF1A", "9606", "2" ], [ "Q61539-1", "EBI-2312731", "Q61539", "EBI-2312731", "ERR2_MOUSE", "Esrrb", "10090", "4" ], [ "Q61539-1", "EBI-2312731", "Q61539", "EBI-2312731", "ERR2_MOUSE", "Esrrb", "10090", "2" ], [ "Q61539-1", "EBI-2312731", "Q3UNW5", "EBI-5691372", "TF2L1_MOUSE", "Tfcp2l1", "10090", "4" ], [ "Q61539-1", "EBI-2312731", "Q9R190", "EBI-904134", "MTA2_MOUSE", "Mta2", "10090", "2" ], [ "Q61539-1", "EBI-2312731", "Q61539", "EBI-2312731", "ERR2_MOUSE", "Esrrb", "10090", "2" ], [ "Q61539-1", "EBI-2312731", "Q61066", "EBI-2312665", "NR0B1_MOUSE", "Nr0b1", "10090", "2" ], [ "Q921C5-1", "EBI-642984", "P49792", "EBI-973138", "RBP2_HUMAN", "RANBP2", "9606", "4" ], [ "Q921C5-1", "EBI-642984", "Q921C5", "EBI-642984", "BICD2_MOUSE", "Bicd2", "10090", "3" ], [ "Q921C5-1", "EBI-642984", "P35279", "EBI-444674", "RAB6A_MOUSE", "Rab6a", "10090", "3" ], [ "Q08639-1", "EBI-1216575", "P51141", "EBI-1538407", "DVL1_MOUSE", "Dvl1", "10090", "3" ], [ "Q08639-1", "EBI-1216575", "Q08639", "EBI-1216575", "TFDP1_MOUSE", "Tfdp1", "10090", "3" ], [ "P48410-1", "EBI-81118", "P33897", "EBI-81045", "ABCD1_HUMAN", "ABCD1", "9606", "2" ], [ "P70168-1", "EBI-540580", "P49790", "EBI-286779", "NU153_HUMAN", "NUP153", "9606", "2" ], [ "Q8BTY2-1", "EBI-11621670", "Q9ES64-3", "EBI-7418919", "USH1C_MOUSE", "Ush1c", "10090", "2" ], [ "Q8BTY2-1", "EBI-11621670", "Q8BTY2", "EBI-11621670", "S4A7_MOUSE", "Slc4a7", "10090", "2" ], [ "Q9Z0S3-1", "EBI-7774956", "Q9Y5I7", "EBI-7774981", "CLD16_HUMAN", "CLDN16", "9606", "3" ], [ "Q9Z0S6-1", "EBI-15799971", "Q8N6F1-2", "EBI-12256978", "CLD19_HUMAN", "CLDN19", "9606", "2" ], [ "Q9DAK2-1", "EBI-8572392", "Q61845", "EBI-15805257", "MEIG1_MOUSE", "Meig1", "10090", "3" ], [ "Q9DAK2-1", "EBI-8572392", "Q9DAK2", "EBI-8572392", "PACRG_MOUSE", "Pacrg", "10090", "3" ], [ "Q61083-1", "EBI-446134", "Q61083", "EBI-446134", "M3K2_MOUSE", "Map3k2", "10090", "4" ], [ "Q61083-1", "EBI-446134", "Q9WVS7", "EBI-446144", "MP2K5_MOUSE", "Map2k5", "10090", "4" ], [ "Q9Z0S9-1", "EBI-476965", "P01112", "EBI-350145", "RASH_HUMAN", "HRAS", "9606", "4" ], [ "Q9Z0S9-1", "EBI-476965", "P61586", "EBI-446668", "RHOA_HUMAN", "RHOA", "9606", "2" ], [ "Q9QYH6-1", "EBI-1801274", "Q03358", "EBI-1801354", "MSX2_MOUSE", "Msx2", "10090", "5" ], [ "Q9QYH6-1", "EBI-1801274", "O55176-2", "EBI-1801670", "PJA1_MOUSE", "Pja1", "10090", "2" ], [ "Q9QYH6-1", "EBI-1801274", "P25233", "EBI-1801080", "NECD_MOUSE", "Ndn", "10090", "7" ], [ "Q9QYH6-1", "EBI-1801274", "P51448", "EBI-1169722", "RORA_MOUSE", "Rora", "10090", "5" ], [ "Q9QYH6-1", "EBI-1801274", "Q9QYH6", "EBI-1801274", "MAGD1_MOUSE", "Maged1", "10090", "5" ], [ "Q9QYH6-1", "EBI-1801274", "Q9QYH6", "EBI-1801274", "MAGD1_MOUSE", "Maged1", "10090", "7" ], [ "Q9QYH6-1", "EBI-1801274", "Q9QYH6", "EBI-1801274", "MAGD1_MOUSE", "Maged1", "10090", "2" ] ] }, "readme": "Name\n - Mouse Protein Binary Interactions (IntAct)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-11-30T13:08:44.669121\n\nModified on\n - 2020-04-10T12:47:31.915371\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Binary Interaction (IntAct) dataset contains mouse [taxid:10116] binary interaction data for UniProtKB canonical accession from IntAct database. The data is quality filtered by UniProt from IntAct and contains information about the interactors, number of experiments, IntAct Ids etc. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - Binary Interactions\n - IntAct\n - UniProtKB\n\n Pipeline Steps\n - Step-0: The script loads the binary interactions data for UniProtKB canonical interactions from the triplestore and extracts it as a dataset in csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/mouse_protein_masterlist.csv\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_binary_interactions.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_binary_interactions.csv\n Name: mouse_protein_binary_interactions.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_binary_interactions.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_binary_interactions.csv" }