{ "bcoid": "GLY_000313", "title": "Human Protein Binary Interactions (IntAct)", "description": "The Human Protein Binary Interaction (IntAct) dataset contains human [taxid:10116] binary interaction ...", "filename": "human_protein_binary_interactions.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Binary Interaction", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF4-1...", "EBI-11124401..." ], [ "Q8TBF4-1...", "EBI-11124401..." ] ], "headers": [ "uniprotkb_ca...", "intact_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "intact_ac" }, { "type": "string", "label": "participant_uniprotkb_ac" }, { "type": "string", "label": "participant_intact_ac" }, { "type": "string", "label": "participant_uniprotkb_id" }, { "type": "string", "label": "participant_gene_symbol" }, { "type": "string", "label": "participant_taxid" }, { "type": "string", "label": "experiments" } ], [ "Q8TBF4-1", "EBI-11124401", "O43933", "EBI-988601", "PEX1_HUMAN", "PEX1", "9606", "3" ], [ "Q8TBF4-1", "EBI-11124401", "Q8TBF4", "EBI-11124401", "ZCRB1_HUMAN", "ZCRB1", "9606", "3" ], [ "Q8TBF4-1", "EBI-11124401", "O76024", "EBI-720609", "WFS1_HUMAN", "WFS1", "9606", "3" ], [ "Q8TBF4-1", "EBI-11124401", "Q8TBF4", "EBI-11124401", "ZCRB1_HUMAN", "ZCRB1", "9606", "3" ], [ "Q8TBF4-1", "EBI-11124401", "P04792", "EBI-352682", "HSPB1_HUMAN", "HSPB1", "9606", "3" ], [ "Q8TBF4-1", "EBI-11124401", "Q8TBF4", "EBI-11124401", "ZCRB1_HUMAN", "ZCRB1", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "Q9UPY8", "EBI-726739", "MARE3_HUMAN", "MAPRE3", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "Q9NQ79", "EBI-10205543", "CRAC1_HUMAN", "CRTAC1", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "Q15555", "EBI-739717", "MARE2_HUMAN", "MAPRE2", "9606", "7" ], [ "Q9NQ79-1", "EBI-10205543", "Q9NQ79", "EBI-10205543", "CRAC1_HUMAN", "CRTAC1", "9606", "7" ], [ "Q9NQ79-1", "EBI-10205543", "Q8NDC4", "EBI-10269566", "MORN4_HUMAN", "MORN4", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "Q9NQ79", "EBI-10205543", "CRAC1_HUMAN", "CRTAC1", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "P29972", "EBI-745213", "AQP1_HUMAN", "AQP1", "9606", "3" ], [ "Q9NQ79-1", "EBI-10205543", "Q9NQ79", "EBI-10205543", "CRAC1_HUMAN", "CRTAC1", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q8IUQ4", "EBI-747107", "SIAH1_HUMAN", "SIAH1", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q8ND90", "EBI-302345", "PNMA1_HUMAN", "PNMA1", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q12933", "EBI-355744", "TRAF2_HUMAN", "TRAF2", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q13077", "EBI-359224", "TRAF1_HUMAN", "TRAF1", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q5JR59", "EBI-742948", "MTUS2_HUMAN", "MTUS2", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q8IZU0", "EBI-10175124", "FAM9B_HUMAN", "FAM9B", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q08379", "EBI-618309", "GOGA2_HUMAN", "GOLGA2", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "P14373", "EBI-719493", "TRI27_HUMAN", "TRIM27", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q13643", "EBI-741101", "FHL3_HUMAN", "FHL3", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q5VU43", "EBI-1105124", "MYOME_HUMAN", "PDE4DIP", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q8NA61", "EBI-741724", "CBY2_HUMAN", "CBY2", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q8IYF3", "EBI-742397", "TEX11_HUMAN", "TEX11", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q6A162", "EBI-10171697", "K1C40_HUMAN", "KRT40", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9Y2D8", "EBI-2212028", "ADIP_HUMAN", "SSX2IP", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q99750", "EBI-724076", "MDFI_HUMAN", "MDFI", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9BRK4", "EBI-741037", "LZTS2_HUMAN", "LZTS2", "9606", "3" ], [ "Q9NVL8-1", "EBI-10238351", "Q9NVL8", "EBI-10238351", "CC198_HUMAN", "CCDC198", "9606", "3" ], [ "Q8TBF2-1", "EBI-7280826", "Q9UNS2", "EBI-350590", "CSN3_HUMAN", "COPS3", "9606", "5" ], [ "Q8TBF2-1", "EBI-7280826", "Q8TBF2", "EBI-7280826", "PXL2B_HUMAN", "PRXL2B", "9606", "5" ], [ "Q8TBF2-1", "EBI-7280826", "Q9NUJ3", "EBI-2555179", "T11L1_HUMAN", "TCP11L1", "9606", "6" ], [ "Q8TBF2-1", "EBI-7280826", "Q8TBF2", "EBI-7280826", "PXL2B_HUMAN", "PRXL2B", "9606", "6" ], [ "Q5H9L4-1", "EBI-6658013", "P41227", "EBI-747693", "NAA10_HUMAN", "NAA10", "9606", "3" ], [ "Q5H9L4-1", "EBI-6658013", "Q5H9L4", "EBI-6658013", "TAF7L_HUMAN", "TAF7L", "9606", "3" ], [ "Q9NQ76-1", "EBI-1753293", "Q2QGD7", "EBI-1538838", "ZXDC_HUMAN", "ZXDC", "9606", "3" ], [ "Q9NQ76-1", "EBI-1753293", "Q9NQ76", "EBI-1753293", "MEPE_HUMAN", "MEPE", "9606", "3" ], [ "Q9NQ76-1", "EBI-1753293", "Q9NQ76", "EBI-1753293", "MEPE_HUMAN", "MEPE", "9606", "2" ], [ "Q9NQ76-1", "EBI-1753293", "P78562", "EBI-2827676", "PHEX_HUMAN", "PHEX", "9606", "2" ], [ "Q9NQ76-1", "EBI-1753293", "P16333", "EBI-389883", "NCK1_HUMAN", "NCK1", "9606", "3" ], [ "Q9NQ76-1", "EBI-1753293", "Q9NQ76", "EBI-1753293", "MEPE_HUMAN", "MEPE", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "P21673", "EBI-711613", "SAT1_HUMAN", "SAT1", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NZD8", "EBI-742688", "SPG21_HUMAN", "SPG21", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NX04", "EBI-8643161", "CA109_HUMAN", "C1orf109", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q13077", "EBI-359224", "TRAF1_HUMAN", "TRAF1", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1", "EBI-751617", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q8NB12", "EBI-8463848", "SMYD1_HUMAN", "SMYD1", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "O95231", "EBI-10191303", "VENTX_HUMAN", "VENTX", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q86X02", "EBI-11063830", "CDR2L_HUMAN", "CDR2L", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "O75934", "EBI-1050106", "SPF27_HUMAN", "BCAS2", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q7Z3Y9", "EBI-12084444", "K1C26_HUMAN", "KRT26", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q49AR9", "EBI-11954519", "Q49AR9_HUMAN", "ANKS1A", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q8WZ74", "EBI-1774260", "CTTB2_HUMAN", "CTTNBP2", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "5" ], [ "Q9NVL1-1", "EBI-751617", "Q9NVL1-2", "EBI-12845222", "F86C1_HUMAN", "FAM86C1P", "9606", "3" ], [ "Q9NVL1-1", "EBI-751617", "Q92824-2", "EBI-11956269", "PCSK5_HUMAN", "PCSK5", "9606", "3" ] ] }, "readme": "Name\n - Human Protein Binary Interactions (IntAct)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-11-30T13:05:58.133075\n\nModified on\n - 2020-04-11T11:27:29.829157\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Binary Interaction (IntAct) dataset contains human [taxid:10116] binary interaction data for UniProtKB canonical accession from IntAct database. The data is quality filtered by UniProt from IntAct and contains information about the interactors, number of experiments, IntAct Ids etc. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - Binary Interactions\n - IntAct\n - UniProtKB\n\n Pipeline Steps\n - Step-0: The script loads the binary interactions data for UniProtKB canonical interactions from the triplestore and extracts it as a dataset in csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_binary_interactions.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_binary_interactions.csv\n Name: human_protein_binary_interactions.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_binary_interactions.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_binary_interactions.csv" }