{ "bcoid": "GLY_000282", "title": "Glycan Classification", "description": "The dataset provides information on the glycan classification such as glycan type and sub-type for the ...", "filename": "glycan_classification.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Classification", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G76100HQ...", "O-linked..." ], [ "G22196LK...", "N-linked..." ] ], "headers": [ "glytoucan_ac...", "glycan_type..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glycan_type" }, { "type": "string", "label": "glycan_type_source" }, { "type": "string", "label": "glycan_type_source_id" }, { "type": "string", "label": "glycan_subtype" }, { "type": "string", "label": "glycan_subtype_source" }, { "type": "string", "label": "glycan_subtype_source_id" } ], [ "G76100HQ", "O-linked", "Subsumption", "G07078LK", "Core 1", "Subsumption", "G07078LK" ], [ "G22196LK", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G27946NT", "N-linked", "GlycoMotif", "GGM.001001", "", "", "" ], [ "G71280GW", "N-linked", "GlycoMotif", "GGM.001022", "Truncated", "GlycoMotif", "GGM.001022" ], [ "G67583XR", "O-linked", "Subsumption", "G10031LH", "Core 2", "Subsumption", "G10031LH" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Core-fucosylated", "Subsumption", "G00025YC" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Bisected", "Subsumption", "G00826SV" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Truncated", "Subsumption", "G66554NB" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Complex", "Subsumption", "G00025YC" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Hybrid", "Subsumption", "G01755WL" ], [ "G91636VS", "N-linked", "Subsumption", "G00025YC", "Arm-fucosylated", "Subsumption", "G09650BK" ], [ "G91636VS", "Glycosphingolipid", "Subsumption", "G47446VC", "Neo-lacto series", "Subsumption", "G47446VC" ], [ "G91636VS", "Glycosphingolipid", "Subsumption", "G47446VC", "Lacto series", "Subsumption", "G58941UN" ], [ "G79026TT", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G79026TT", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G33734YD", "N-linked", "GlycoMotif", "GGM.001024", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G30001EY", "Glycosphingolipid", "Subsumption", "G29966WK", "Ganglio series", "Subsumption", "G29966WK" ], [ "G48472LJ", "O-linked", "GlycoMotif", "GGM.001007", "Core 2", "GlycoMotif", "GGM.001007" ], [ "G64828QT", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G64828QT", "N-linked", "GlycoMotif", "GGM.001004", "Arm-fucosylated", "GlycoMotif", "GGM.001025" ], [ "G64828QT", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G96934US", "O-linked", "Subsumption", "G08465VN", "Core 1", "Subsumption", "G08465VN" ], [ "G09173AD", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G59345UT", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G59345UT", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G89621BX", "N-linked", "Subsumption", "G02173JB", "Truncated", "Subsumption", "G02173JB" ], [ "G24634JN", "N-linked", "Subsumption", "G03089XS", "Bisected", "Subsumption", "G03984TW" ], [ "G24634JN", "N-linked", "Subsumption", "G03089XS", "Core-fucosylated", "Subsumption", "G03089XS" ], [ "G24634JN", "N-linked", "Subsumption", "G03089XS", "Arm-fucosylated", "Subsumption", "G03089XS" ], [ "G24634JN", "N-linked", "Subsumption", "G03089XS", "Complex", "Subsumption", "G03089XS" ], [ "G17218WW", "O-linked", "GlycoMotif", "GGM.001008", "Core 2", "GlycoMotif", "GGM.001008" ], [ "G59456VR", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G59456VR", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G23193VZ", "N-linked", "Subsumption", "G08027ZQ", "Core-fucosylated", "Subsumption", "G08027ZQ" ], [ "G23193VZ", "N-linked", "Subsumption", "G08027ZQ", "Complex", "Subsumption", "G08027ZQ" ], [ "G12417OE", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G76504RH", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G39632CM", "Glycosphingolipid", "Subsumption", "G04676YO", "Neo-lacto series", "Subsumption", "G12611ZS" ], [ "G39632CM", "Glycosphingolipid", "Subsumption", "G04676YO", "Lacto series", "Subsumption", "G04676YO" ], [ "G70321JY", "Glycosphingolipid", "Subsumption", "G01200BW", "Neo-lacto series", "Subsumption", "G01200BW" ], [ "G70321JY", "Glycosphingolipid", "Subsumption", "G01200BW", "Lacto series", "Subsumption", "G31651JD" ], [ "G58251ZG", "N-linked", "GlycoMotif", "GGM.001001", "", "", "" ], [ "G55786MG", "N-linked", "GlycoMotif", "GGM.001002", "High mannose", "GlycoMotif", "GGM.001002" ], [ "G24823MG", "N-linked", "GlycoMotif", "GGM.001004", "Bisected", "GlycoMotif", "GGM.001023" ], [ "G24823MG", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G18574CV", "O-linked", "GlycoMotif", "GGM.001005", "Core 1", "GlycoMotif", "GGM.001005" ], [ "G17593CN", "N-linked", "GlycoMotif", "GGM.001004", "Alditol-reduced", "GlycoMotif", "GGM.001026" ], [ "G17593CN", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G99580PT", "Glycosphingolipid", "GlycoMotif", "GGM.001107", "Neo-lacto series", "GlycoMotif", "GGM.001107" ], [ "G47870LR", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G47870LR", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G62707LQ", "N-linked", "Subsumption", "G11771HD", "Hybrid", "Subsumption", "G11771HD" ], [ "G64458EC", "O-linked", "GlycoMotif", "GGM.001007", "Core 2", "GlycoMotif", "GGM.001007" ], [ "G72011DH", "N-linked", "GlycoMotif", "GGM.001004", "Bisected", "Subsumption", "G10733HY" ], [ "G72011DH", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G72011DH", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G29288DT", "N-linked", "GlycoMotif", "GGM.001002", "High mannose", "GlycoMotif", "GGM.001002" ], [ "G60837AI", "N-linked", "GlycoMotif", "GGM.001001", "", "", "" ], [ "G79365EN", "Glycosphingolipid", "GlycoMotif", "GGM.001106", "Neo-lacto series", "GlycoMotif", "GGM.001107" ], [ "G79365EN", "Glycosphingolipid", "GlycoMotif", "GGM.001106", "Lacto series", "GlycoMotif", "GGM.001106" ], [ "G13091NP", "N-linked", "GlycoMotif", "GGM.001004", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G13091NP", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G96919WB", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G25953KD", "O-linked", "GlycoMotif", "GGM.001010", "Core 3", "GlycoMotif", "GGM.001010" ], [ "G57522BR", "N-linked", "GlycoMotif", "GGM.001004", "Arm-fucosylated", "GlycoMotif", "GGM.001025" ], [ "G57522BR", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G25451PN", "N-linked", "Subsumption", "G03136UJ", "Bisected", "Subsumption", "G07226DF" ], [ "G25451PN", "N-linked", "Subsumption", "G03136UJ", "Core-fucosylated", "Subsumption", "G04561MG" ], [ "G25451PN", "N-linked", "Subsumption", "G03136UJ", "Arm-fucosylated", "Subsumption", "G04561MG" ], [ "G25451PN", "N-linked", "Subsumption", "G03136UJ", "Complex", "Subsumption", "G03136UJ" ], [ "G25451PN", "O-linked", "Subsumption", "G65481GA", "Core 1", "Subsumption", "G65481GA" ], [ "G10440YK", "N-linked", "GlycoMotif", "GGM.001024", "Core-fucosylated", "GlycoMotif", "GGM.001024" ], [ "G31544HA", "N-linked", "Subsumption", "G00691NS", "Bisected", "Subsumption", "G04248AK" ], [ "G31544HA", "N-linked", "Subsumption", "G00691NS", "Core-fucosylated", "Subsumption", "G00691NS" ], [ "G31544HA", "N-linked", "Subsumption", "G00691NS", "Arm-fucosylated", "Subsumption", "G14567OB" ], [ "G31544HA", "N-linked", "Subsumption", "G00691NS", "Complex", "Subsumption", "G00691NS" ], [ "G81536GE", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G47270FQ", "Glycosphingolipid", "Subsumption", "G00049MO", "Gala series", "Subsumption", "G66375ZI" ], [ "G47270FQ", "Glycosphingolipid", "Subsumption", "G00049MO", "Neo-lacto series", "Subsumption", "G00070MO" ], [ "G47270FQ", "Glycosphingolipid", "Subsumption", "G00049MO", "Lacto series", "Subsumption", "G00049MO" ], [ "G22244UZ", "Glycosphingolipid", "GlycoMotif", "GGM.001106", "Neo-lacto series", "GlycoMotif", "GGM.001107" ], [ "G22244UZ", "Glycosphingolipid", "GlycoMotif", "GGM.001106", "Lacto series", "GlycoMotif", "GGM.001106" ], [ "G16437LH", "N-linked", "GlycoMotif", "GGM.001004", "Complex", "GlycoMotif", "GGM.001004" ], [ "G88757PX", "N-linked", "GlycoMotif", "GGM.001004", "Bisected", "GlycoMotif", "GGM.001023" ] ] }, "readme": "Name\n - Glycan Classification\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-11-13T12:59:46.920689\n\nModified on\n - 2020-05-01T15:01:17.670378\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan classification such as glycan type and sub-type for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Classification\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: classification.tsv\n URI: https://data.glygen.org//ln2downloads/glytoucan/gtc_06_30_2021/export/classification.tsv\n Output Subdomain\n Name: glycan_classification.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_classification.csv\n Name: glycan_classification.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_classification.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_classification.csv" }