{ "bcoid": "GLY_000274", "title": "Human Phosphorylation Sites (UniProtKB)", "description": "The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions ...", "filename": "human_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9P2M7-1...", "332..." ], [ "P32745-1...", "332..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q9P2M7-1", "332", "Ser", "", "", "protein_xref_uniprotkb", "Q9P2M7", "protein_xref_uniprotkb", "Q9P2M7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P32745-1", "332", "Ser", "", "", "protein_xref_uniprotkb", "P32745", "protein_xref_uniprotkb", "P32745", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q99698-1", "165", "Thr", "", "", "protein_xref_uniprotkb", "Q99698", "protein_xref_uniprotkb", "Q99698", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P24928-1", "1863", "Thr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P24928-1", "1863", "Thr", "", "", "protein_xref_pubmed", "26566685", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P48668-1", "60", "Ser", "", "", "protein_xref_uniprotkb", "P48668", "protein_xref_uniprotkb", "P48668", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P48668-1", "60", "Ser", "", "", "protein_xref_pubmed", "9054461", "protein_xref_uniprotkb", "P48668", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9NVM1-1", "85", "Thr", "", "", "protein_xref_uniprotkb", "Q9NVM1", "protein_xref_uniprotkb", "Q9NVM1", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q8IW45-1", "85", "Tyr", "", "", "protein_xref_uniprotkb", "Q8IW45", "protein_xref_uniprotkb", "Q8IW45", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P24928-1", "1929", "Thr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P24928-1", "1929", "Thr", "", "", "protein_xref_pubmed", "26566685", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P43004-1", "539", "Tyr", "", "", "protein_xref_uniprotkb", "P43004", "protein_xref_uniprotkb", "P43004", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P78524-1", "545", "Ser", "", "", "protein_xref_uniprotkb", "P78524", "protein_xref_uniprotkb", "P78524", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q7Z434-1", "408", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z434", "protein_xref_uniprotkb", "Q7Z434", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P12036-1", "710", "Ser", "", "", "protein_xref_uniprotkb", "P12036", "protein_xref_uniprotkb", "P12036", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9C0K0-1", "754", "Thr", "", "", "protein_xref_uniprotkb", "Q9C0K0", "protein_xref_uniprotkb", "Q9C0K0", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q8IUC4-1", "655", "Thr", "", "", "protein_xref_uniprotkb", "Q8IUC4", "protein_xref_uniprotkb", "Q8IUC4", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P78524-1", "233", "Ser", "", "", "protein_xref_uniprotkb", "P78524", "protein_xref_uniprotkb", "P78524", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O14874-1", "360", "Ser", "", "", "protein_xref_uniprotkb", "O14874", "protein_xref_uniprotkb", "O14874", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9H4X1-1", "91", "Ser", "", "", "protein_xref_uniprotkb", "Q9H4X1", "protein_xref_uniprotkb", "Q9H4X1", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q7RTN6-1", "419", "Thr", "", "", "protein_xref_uniprotkb", "Q7RTN6", "protein_xref_uniprotkb", "Q7RTN6", "Phosphothreonine", "Phosphothreonine; by LKB1", "" ], [ "P06730-1", "209", "Ser", "", "", "protein_xref_uniprotkb", "P06730", "protein_xref_uniprotkb", "P06730", "Phosphoserine", "Phosphoserine; by PKC and MKNK2", "" ], [ "Q9C0H9-5", "621", "Ser", "", "", "protein_xref_uniprotkb", "Q9C0H9", "protein_xref_uniprotkb", "Q9C0H9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q16656-1", "46", "Ser", "", "", "protein_xref_uniprotkb", "Q16656", "protein_xref_uniprotkb", "Q16656", "Phosphoserine", "Phosphoserine; by CK2", "" ], [ "Q9C026-1", "46", "Ser", "", "", "protein_xref_uniprotkb", "Q9C026", "protein_xref_uniprotkb", "Q9C026", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9C0H9-5", "13", "Ser", "", "", "protein_xref_uniprotkb", "Q9C0H9", "protein_xref_uniprotkb", "Q9C0H9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q2M3C7-1", "1025", "Ser", "", "", "protein_xref_uniprotkb", "Q2M3C7", "protein_xref_uniprotkb", "Q2M3C7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q96EX3-1", "15", "Ser", "", "", "protein_xref_uniprotkb", "Q96EX3", "protein_xref_uniprotkb", "Q96EX3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P43405-1", "579", "Ser", "", "", "protein_xref_uniprotkb", "P43405", "protein_xref_uniprotkb", "P43405", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P43405-1", "579", "Ser", "", "", "protein_xref_pubmed", "21469132", "protein_xref_uniprotkb", "P43405", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P07550-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "P07550", "protein_xref_uniprotkb", "P07550", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "O14757-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "O14757", "protein_xref_uniprotkb", "O14757", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "Q9P2M7-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "Q9P2M7", "protein_xref_uniprotkb", "Q9P2M7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P43405-1", "345", "Thr", "", "", "protein_xref_uniprotkb", "P43405", "protein_xref_uniprotkb", "P43405", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P43405-1", "345", "Thr", "", "", "protein_xref_pubmed", "21469132", "protein_xref_uniprotkb", "P43405", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P12036-1", "586", "Ser", "", "", "protein_xref_uniprotkb", "P12036", "protein_xref_uniprotkb", "P12036", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8IXB3-1", "48", "Ser", "", "", "protein_xref_uniprotkb", "Q8IXB3", "protein_xref_uniprotkb", "Q8IXB3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P12036-1", "769", "Ser", "", "", "protein_xref_uniprotkb", "P12036", "protein_xref_uniprotkb", "P12036", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8N9N8-1", "136", "Ser", "", "", "protein_xref_uniprotkb", "Q8N9N8", "protein_xref_uniprotkb", "Q8N9N8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9H4B6-1", "136", "Ser", "", "", "protein_xref_uniprotkb", "Q9H4B6", "protein_xref_uniprotkb", "Q9H4B6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9Y6Y8-1", "737", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y6Y8", "protein_xref_uniprotkb", "Q9Y6Y8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P78524-1", "32", "Ser", "", "", "protein_xref_uniprotkb", "P78524", "protein_xref_uniprotkb", "P78524", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9BVP2-1", "504", "Ser", "", "", "protein_xref_uniprotkb", "Q9BVP2", "protein_xref_uniprotkb", "Q9BVP2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q13586-1", "504", "Thr", "", "", "protein_xref_uniprotkb", "Q13586", "protein_xref_uniprotkb", "Q13586", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q9NQX3-1", "265", "Thr", "", "", "protein_xref_uniprotkb", "Q9NQX3", "protein_xref_uniprotkb", "Q9NQX3", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q9NWH7-1", "265", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWH7", "protein_xref_uniprotkb", "Q9NWH7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9H4G0-1", "870", "Ser", "", "", "protein_xref_uniprotkb", "Q9H4G0", "protein_xref_uniprotkb", "Q9H4G0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P50402-1", "141", "Ser", "", "", "protein_xref_uniprotkb", "P50402", "protein_xref_uniprotkb", "P50402", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9C0K0-1", "772", "Ser", "", "", "protein_xref_uniprotkb", "Q9C0K0", "protein_xref_uniprotkb", "Q9C0K0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9NVM1-1", "148", "Thr", "", "", "protein_xref_uniprotkb", "Q9NVM1", "protein_xref_uniprotkb", "Q9NVM1", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P04406-1", "148", "Ser", "", "", "protein_xref_uniprotkb", "P04406", "protein_xref_uniprotkb", "P04406", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P04406-1", "148", "Ser", "", "", "protein_xref_pubmed", "18183946", "protein_xref_uniprotkb", "P04406", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IXB3-1", "88", "Ser", "", "", "protein_xref_uniprotkb", "Q8IXB3", "protein_xref_uniprotkb", "Q8IXB3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9HCM3-1", "1622", "Thr", "", "", "protein_xref_uniprotkb", "Q9HCM3", "protein_xref_uniprotkb", "Q9HCM3", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P46695-1", "123", "Thr", "", "", "protein_xref_uniprotkb", "P46695", "protein_xref_uniprotkb", "P46695", "Phosphothreonine", "Phosphothreonine; by MAPK1", "" ], [ "Q7RTT3-1", "123", "Ser", "", "", "protein_xref_uniprotkb", "Q7RTT3", "protein_xref_uniprotkb", "Q7RTT3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q7RTT6-1", "123", "Ser", "", "", "protein_xref_uniprotkb", "Q7RTT6", "protein_xref_uniprotkb", "Q7RTT6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P25054-1", "987", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9C0H9-5", "987", "Ser", "", "", "protein_xref_uniprotkb", "Q9C0H9", "protein_xref_uniprotkb", "Q9C0H9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P08727-1", "40", "Ser", "", "", "protein_xref_uniprotkb", "P08727", "protein_xref_uniprotkb", "P08727", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9H4G0-1", "466", "Ser", "", "", "protein_xref_uniprotkb", "Q9H4G0", "protein_xref_uniprotkb", "Q9H4G0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P49418-1", "260", "Thr", "", "", "protein_xref_uniprotkb", "P49418", "protein_xref_uniprotkb", "P49418", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P05023-1", "260", "Tyr", "", "", "protein_xref_uniprotkb", "P05023", "protein_xref_uniprotkb", "P05023", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "O94992-1", "260", "Ser", "", "", "protein_xref_uniprotkb", "O94992", "protein_xref_uniprotkb", "O94992", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P05413-1", "83", "Ser", "", "", "protein_xref_uniprotkb", "P05413", "protein_xref_uniprotkb", "P05413", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O60716-1", "304", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q13698-1", "393", "Ser", "", "", "protein_xref_uniprotkb", "Q13698", "protein_xref_uniprotkb", "Q13698", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P51451-1", "389", "Tyr", "", "", "protein_xref_uniprotkb", "P51451", "protein_xref_uniprotkb", "P51451", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P50402-1", "161", "Tyr", "", "", "protein_xref_uniprotkb", "P50402", "protein_xref_uniprotkb", "P50402", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "O43561-1", "161", "Tyr", "", "", "protein_xref_uniprotkb", "O43561", "protein_xref_uniprotkb", "O43561", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "300", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8N9N8-1", "131", "Ser", "", "", "protein_xref_uniprotkb", "Q8N9N8", "protein_xref_uniprotkb", "Q8N9N8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P43405-1", "131", "Tyr", "", "", "protein_xref_uniprotkb", "P43405", "protein_xref_uniprotkb", "P43405", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P43405-1", "131", "Tyr", "", "", "protein_xref_pubmed", "21469132", "protein_xref_uniprotkb", "P43405", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P12036-1", "606", "Ser", "", "", "protein_xref_uniprotkb", "P12036", "protein_xref_uniprotkb", "P12036", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q99698-1", "164", "Ser", "", "", "protein_xref_uniprotkb", "Q99698", "protein_xref_uniprotkb", "Q99698", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P42566-1", "562", "Ser", "", "", "protein_xref_uniprotkb", "P42566", "protein_xref_uniprotkb", "P42566", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O60271-1", "292", "Thr", "", "", "protein_xref_uniprotkb", "O60271", "protein_xref_uniprotkb", "O60271", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q9C0H9-5", "522", "Ser", "", "", "protein_xref_uniprotkb", "Q9C0H9", "protein_xref_uniprotkb", "Q9C0H9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9P2Y5-1", "522", "Ser", "", "", "protein_xref_uniprotkb", "Q9P2Y5", "protein_xref_uniprotkb", "Q9P2Y5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9P2Y5-1", "522", "Ser", "", "", "protein_xref_pubmed", "25533187", "protein_xref_uniprotkb", "Q9P2Y5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P24928-1", "1919", "Thr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P24928-1", "1919", "Thr", "", "", "protein_xref_pubmed", "26566685", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P55795-1", "54", "Ser", "", "", "protein_xref_uniprotkb", "P55795", "protein_xref_uniprotkb", "P55795", "Phosphoserine", "Phosphoserine", "ECO_0000250" ] ] }, "readme": "Name\n - Human Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:39.000407\n\nModified on\n - 2020-04-10T11:46:19.167448\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: human_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv" }