{ "bcoid": "GLY_000263", "title": "Rat UniProtKB Xref IntAct", "description": "The Rat UniProtKB Xref IntAct dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_intact.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Intact cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB48-1...", "protein_xref..." ], [ "P30938-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "D3ZB48-1", "protein_xref_intact", "D3ZB48", "" ], [ "P30938-1", "protein_xref_intact", "P30938", "" ], [ "Q5RJK6-1", "protein_xref_intact", "Q5RJK6", "" ], [ "P01946-1", "protein_xref_intact", "P01946", "" ], [ "Q5M9G9-1", "protein_xref_intact", "Q5M9G9", "" ], [ "O35152-1", "protein_xref_intact", "O35152", "" ], [ "O35158-1", "protein_xref_intact", "O35158", "" ], [ "Q9QYH1-1", "protein_xref_intact", "Q9QYH1", "" ], [ "P02767-1", "protein_xref_intact", "P02767", "" ], [ "D4A4W6-1", "protein_xref_intact", "D4A4W6", "" ], [ "Q9JHY1-1", "protein_xref_intact", "Q9JHY1", "" ], [ "Q9JHY2-1", "protein_xref_intact", "Q9JHY2", "" ], [ "Q02874-1", "protein_xref_intact", "Q02874", "" ], [ "P08011-1", "protein_xref_intact", "P08011", "" ], [ "Q99JD4-1", "protein_xref_intact", "Q99JD4", "" ], [ "P22002-1", "protein_xref_intact", "P22002", "" ], [ "Q02294-1", "protein_xref_intact", "Q02294", "" ], [ "Q02293-1", "protein_xref_intact", "Q02293", "" ], [ "Q460M5-1", "protein_xref_intact", "Q460M5", "" ], [ "D3ZFP4-1", "protein_xref_intact", "D3ZFP4", "" ], [ "Q6B4M5-1", "protein_xref_intact", "Q6B4M5", "" ], [ "D4A131-1", "protein_xref_intact", "D4A131", "" ], [ "D4A133-1", "protein_xref_intact", "D4A133", "" ], [ "D3ZCS4-1", "protein_xref_intact", "D3ZCS4", "" ], [ "P00176-1", "protein_xref_intact", "P00176", "" ], [ "Q6P5P5-1", "protein_xref_intact", "Q6P5P5", "" ], [ "Q62826-1", "protein_xref_intact", "F1M3D3", "" ], [ "F1M0R1-1", "protein_xref_intact", "F1M0R1", "" ], [ "Q63416-1", "protein_xref_intact", "D3ZBS2", "" ], [ "Q9QYH7-1", "protein_xref_intact", "Q9QYH7", "" ], [ "B1WC33-1", "protein_xref_intact", "B1WC33", "" ], [ "P61980-1", "protein_xref_intact", "Q5D059", "" ], [ "P62630-1", "protein_xref_intact", "P62630", "" ], [ "P62632-1", "protein_xref_intact", "P62632", "" ], [ "D4AE80-1", "protein_xref_intact", "D4AE80", "" ], [ "Q5BJS7-1", "protein_xref_intact", "Q5BJS7", "" ], [ "Q9Z270-1", "protein_xref_intact", "Q9Z270", "" ], [ "Q9Z272-1", "protein_xref_intact", "Q9Z272", "" ], [ "P26433-1", "protein_xref_intact", "P26433", "" ], [ "P37089-1", "protein_xref_intact", "P37089", "" ], [ "Q91Z63-1", "protein_xref_intact", "Q91Z63", "" ], [ "Q00972-1", "protein_xref_intact", "Q00972", "" ], [ "O35793-1", "protein_xref_intact", "O35793", "" ], [ "O70277-1", "protein_xref_intact", "O70277", "" ], [ "D4A678-1", "protein_xref_intact", "D4A678", "" ], [ "D3ZH30-1", "protein_xref_intact", "D3ZH30", "" ], [ "Q9ESN0-1", "protein_xref_intact", "Q9ESN0", "" ], [ "Q505J8-1", "protein_xref_intact", "Q505J8", "" ], [ "P34067-1", "protein_xref_intact", "P34067", "" ], [ "P31016-1", "protein_xref_intact", "P31016", "" ], [ "Q66HR0-1", "protein_xref_intact", "Q66HR0", "" ], [ "P35434-1", "protein_xref_intact", "B1WBP7", "" ], [ "Q63285-1", "protein_xref_intact", "Q63285", "" ], [ "D3ZEJ2-1", "protein_xref_intact", "D3ZEJ2", "" ], [ "P19627-1", "protein_xref_intact", "P19627", "" ], [ "Q62739-1", "protein_xref_intact", "Q62739", "" ], [ "F1LSG8-1", "protein_xref_intact", "F1LSG8", "" ], [ "Q62735-1", "protein_xref_intact", "Q62735", "" ], [ "Q9Z1Z9-1", "protein_xref_intact", "Q9Z1Z9", "" ], [ "Q68FX4-1", "protein_xref_intact", "Q68FX4", "" ], [ "Q68FX0-1", "protein_xref_intact", "Q68FX0", "" ], [ "P30009-1", "protein_xref_intact", "P30009", "" ], [ "F1MAF2-1", "protein_xref_intact", "F1MAF2", "" ], [ "D4A8E7-1", "protein_xref_intact", "D4A8E7", "" ], [ "P54319-1", "protein_xref_intact", "P54319", "" ], [ "Q63009-1", "protein_xref_intact", "Q63009", "" ], [ "P04177-1", "protein_xref_intact", "P04177", "" ], [ "Q2LC84-1", "protein_xref_intact", "Q2LC84", "" ], [ "Q04666-1", "protein_xref_intact", "Q04666", "" ], [ "P00884-1", "protein_xref_intact", "P00884", "" ], [ "Q6Y2E6-1", "protein_xref_intact", "Q6Y2E6", "" ], [ "P16290-1", "protein_xref_intact", "P16290", "" ], [ "P62282-1", "protein_xref_intact", "P62282", "" ], [ "O35800-1", "protein_xref_intact", "O35800", "" ], [ "D4A307-1", "protein_xref_intact", "D4A307", "" ], [ "Q01621-1", "protein_xref_intact", "Q01621", "" ], [ "B0BND0-1", "protein_xref_intact", "B0BND0", "" ], [ "O88498-1", "protein_xref_intact", "O88498", "" ], [ "Q925C0-1", "protein_xref_intact", "Q925C0", "" ], [ "Q9QY17-1", "protein_xref_intact", "Q9QY17", "" ], [ "O08662-1", "protein_xref_intact", "O08662", "" ], [ "A0A0G2KAN5-1", "protein_xref_intact", "B2RYQ5", "" ], [ "Q8CJB9-1", "protein_xref_intact", "Q8CJB9", "" ], [ "Q5XI90-1", "protein_xref_intact", "Q5XI90", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref IntAct\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.989848\n\nModified on\n - 2022-01-19T13:49:18.808628\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref IntAct dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to IntAct database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. The IntAct Team also produce the Complex Portal. \n\nDescription Domain\n Keywords\n - molecular interaction data\n - protein-protein interaction\n - IntAct\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to IntAct database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_intact.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_intact.csv\n Name: rat_protein_xref_intact.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_intact.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_intact.csv" }