{ "bcoid": "GLY_000262", "title": "Rat UniProtKB Xref PRO", "description": "The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Pro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q0HA29-1...", "protein_xref..." ], [ "P30938-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q0HA29-1", "protein_xref_pro", "PR_Q0HA29", "" ], [ "P30938-1", "protein_xref_pro", "PR_P30938", "" ], [ "Q07969-1", "protein_xref_pro", "PR_Q07969", "" ], [ "A0A096MJY4-1", "protein_xref_pro", "PR_A0A096MJY4", "" ], [ "Q62949-1", "protein_xref_pro", "PR_Q62949", "" ], [ "P01946-1", "protein_xref_pro", "PR_P01946", "" ], [ "Q5M9G9-1", "protein_xref_pro", "PR_Q5M9G9", "" ], [ "O35152-1", "protein_xref_pro", "PR_O35152", "" ], [ "P30936-1", "protein_xref_pro", "PR_P30936", "" ], [ "O35158-1", "protein_xref_pro", "PR_O35158", "" ], [ "P02761-1", "protein_xref_pro", "PR_P02761", "" ], [ "Q9QYH1-1", "protein_xref_pro", "PR_Q9QYH1", "" ], [ "P02764-1", "protein_xref_pro", "PR_P02764", "" ], [ "P02767-1", "protein_xref_pro", "PR_P02767", "" ], [ "P39020-1", "protein_xref_pro", "PR_P39020", "" ], [ "P01237-1", "protein_xref_pro", "PR_P01237", "" ], [ "P01230-1", "protein_xref_pro", "PR_P01230", "" ], [ "P09006-1", "protein_xref_pro", "PR_P09006", "" ], [ "Q9JHY8-1", "protein_xref_pro", "PR_Q9JHY8", "" ], [ "Q9JHY1-1", "protein_xref_pro", "PR_Q9JHY1", "" ], [ "Q9JHY2-1", "protein_xref_pro", "PR_Q9JHY2", "" ], [ "Q9JHY7-1", "protein_xref_pro", "PR_Q9JHY7", "" ], [ "Q02874-1", "protein_xref_pro", "PR_Q02874", "" ], [ "P08699-1", "protein_xref_pro", "PR_P08699", "" ], [ "P08011-1", "protein_xref_pro", "PR_P08011", "" ], [ "Q99JD4-1", "protein_xref_pro", "PR_Q99JD4", "" ], [ "Q99JD1-1", "protein_xref_pro", "PR_Q99JD1", "" ], [ "Q99JD3-1", "protein_xref_pro", "PR_Q99JD3", "" ], [ "Q99JD2-1", "protein_xref_pro", "PR_Q99JD2", "" ], [ "P22002-1", "protein_xref_pro", "PR_P22002", "" ], [ "Q02294-1", "protein_xref_pro", "PR_Q02294", "" ], [ "Q02293-1", "protein_xref_pro", "PR_Q02293", "" ], [ "Q8K5E0-1", "protein_xref_pro", "PR_Q8K5E0", "" ], [ "Q460M5-1", "protein_xref_pro", "PR_Q460M5", "" ], [ "Q9R1N3-1", "protein_xref_pro", "PR_Q9R1N3", "" ], [ "P22006-1", "protein_xref_pro", "PR_P22006", "" ], [ "D3ZSP7-1", "protein_xref_pro", "PR_D3ZSP7", "" ], [ "P48550-1", "protein_xref_pro", "PR_P48550", "" ], [ "Q6B4M5-1", "protein_xref_pro", "PR_Q6B4M5", "" ], [ "Q9JIL8-1", "protein_xref_pro", "PR_Q9JIL8", "" ], [ "O88664-1", "protein_xref_pro", "PR_O88664", "" ], [ "P00176-1", "protein_xref_pro", "PR_P00176", "" ], [ "Q6P5P5-1", "protein_xref_pro", "PR_Q6P5P5", "" ], [ "Q6P5P3-1", "protein_xref_pro", "PR_Q6P5P3", "" ], [ "P09660-1", "protein_xref_pro", "PR_P09660", "" ], [ "P32301-1", "protein_xref_pro", "PR_P32301", "" ], [ "A0A0G2JVZ7-1", "protein_xref_pro", "PR_A0A0G2JVZ7", "" ], [ "Q9QYH7-1", "protein_xref_pro", "PR_Q9QYH7", "" ], [ "B1WC39-1", "protein_xref_pro", "PR_B1WC39", "" ], [ "Q6MFZ5-1", "protein_xref_pro", "PR_Q6MFZ5", "" ], [ "O08949-1", "protein_xref_pro", "PR_O08949", "" ], [ "P62634-1", "protein_xref_pro", "PR_P62634", "" ], [ "P62630-1", "protein_xref_pro", "PR_P62630", "" ], [ "P62632-1", "protein_xref_pro", "PR_P62632", "" ], [ "Q76LT8-1", "protein_xref_pro", "PR_Q76LT8", "" ], [ "Q5BJS0-1", "protein_xref_pro", "PR_Q5BJS0", "" ], [ "Q5BJS2-1", "protein_xref_pro", "PR_Q5BJS2", "" ], [ "Q5BJS4-1", "protein_xref_pro", "PR_Q5BJS4", "" ], [ "Q5BJS7-1", "protein_xref_pro", "PR_Q5BJS7", "" ], [ "Q5BJS9-1", "protein_xref_pro", "PR_Q5BJS9", "" ], [ "Q9Z270-1", "protein_xref_pro", "PR_Q9Z270", "" ], [ "Q9Z272-1", "protein_xref_pro", "PR_Q9Z272", "" ], [ "Q1M168-1", "protein_xref_pro", "PR_Q1M168", "" ], [ "P56932-1", "protein_xref_pro", "PR_P56932", "" ], [ "P26433-1", "protein_xref_pro", "PR_P26433", "" ], [ "P37089-1", "protein_xref_pro", "PR_P37089", "" ], [ "Q91Z63-1", "protein_xref_pro", "PR_Q91Z63", "" ], [ "Q91Z62-1", "protein_xref_pro", "PR_Q91Z62", "" ], [ "Q00972-1", "protein_xref_pro", "PR_Q00972", "" ], [ "O35793-1", "protein_xref_pro", "PR_O35793", "" ], [ "O35790-1", "protein_xref_pro", "PR_O35790", "" ], [ "O35795-1", "protein_xref_pro", "PR_O35795", "" ], [ "O35799-1", "protein_xref_pro", "PR_O35799", "" ], [ "O70277-1", "protein_xref_pro", "PR_O70277", "" ], [ "O70276-1", "protein_xref_pro", "PR_O70276", "" ], [ "Q9ESN0-1", "protein_xref_pro", "PR_Q9ESN0", "" ], [ "Q5BK30-1", "protein_xref_pro", "PR_Q5BK30", "" ], [ "Q5BK32-1", "protein_xref_pro", "PR_Q5BK32", "" ], [ "Q5BK38-1", "protein_xref_pro", "PR_Q5BK38", "" ], [ "Q5BK39-1", "protein_xref_pro", "PR_Q5BK39", "" ], [ "Q505J8-1", "protein_xref_pro", "PR_Q505J8", "" ], [ "P34067-1", "protein_xref_pro", "PR_P34067", "" ], [ "P31016-1", "protein_xref_pro", "PR_P31016", "" ], [ "Q9ERD9-1", "protein_xref_pro", "PR_Q9ERD9", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PRO\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.988943\n\nModified on\n - 2022-01-19T13:45:29.898586\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. \n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_pro.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_pro.csv\n Name: rat_protein_xref_pro.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_pro.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_pro.csv" }