{ "bcoid": "GLY_000259", "title": "Rat UniProtKB Xref UniCarbKB", "description": "The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Unicarbkb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P09006-1...", "protein_xref..." ], [ "O35795-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P09006-1", "protein_xref_unicarbkb", "P09006", "UniCarbKB" ], [ "O35795-1", "protein_xref_unicarbkb", "O35795", "UniCarbKB" ], [ "Q8VII6-1", "protein_xref_unicarbkb", "Q8VII6", "UniCarbKB" ], [ "P14841-1", "protein_xref_unicarbkb", "P14841", "UniCarbKB" ], [ "B0BND0-1", "protein_xref_unicarbkb", "B0BND0", "UniCarbKB" ], [ "Q8K3V3-1", "protein_xref_unicarbkb", "Q8K3V3", "UniCarbKB" ], [ "Q63345-1", "protein_xref_unicarbkb", "Q63345", "UniCarbKB" ], [ "Q63564-1", "protein_xref_unicarbkb", "Q63564", "UniCarbKB" ], [ "P97603-1", "protein_xref_unicarbkb", "P97603", "UniCarbKB" ], [ "P48284-1", "protein_xref_unicarbkb", "P48284", "UniCarbKB" ], [ "Q9JK00-1", "protein_xref_unicarbkb", "Q9JK00", "UniCarbKB" ], [ "F1MAN8-1", "protein_xref_unicarbkb", "F1MAN8", "UniCarbKB" ], [ "Q9JJW1-1", "protein_xref_unicarbkb", "Q9JJW1", "UniCarbKB" ], [ "O54861-1", "protein_xref_unicarbkb", "O54861", "UniCarbKB" ], [ "P97686-1", "protein_xref_unicarbkb", "P97686", "UniCarbKB" ], [ "Q5FVI4-1", "protein_xref_unicarbkb", "Q5FVI4", "UniCarbKB" ], [ "P24268-1", "protein_xref_unicarbkb", "P24268", "UniCarbKB" ], [ "Q5PQV5-1", "protein_xref_unicarbkb", "Q5PQV5", "UniCarbKB" ], [ "B5DEQ0-1", "protein_xref_unicarbkb", "B5DEQ0", "UniCarbKB" ], [ "Q5XII0-1", "protein_xref_unicarbkb", "Q5XII0", "UniCarbKB" ], [ "P97829-1", "protein_xref_unicarbkb", "P97829", "UniCarbKB" ], [ "Q99MZ4-1", "protein_xref_unicarbkb", "Q99MZ4", "UniCarbKB" ], [ "G3V928-1", "protein_xref_unicarbkb", "G3V928", "UniCarbKB" ], [ "P13638-1", "protein_xref_unicarbkb", "P13638", "UniCarbKB" ], [ "Q63198-1", "protein_xref_unicarbkb", "Q63198", "UniCarbKB" ], [ "Q5NDF0-1", "protein_xref_unicarbkb", "Q5NDF0", "UniCarbKB" ], [ "A2VD12-1", "protein_xref_unicarbkb", "A2VD12", "UniCarbKB" ], [ "Q64663-1", "protein_xref_unicarbkb", "Q64663", "UniCarbKB" ], [ "P48199-1", "protein_xref_unicarbkb", "P48199", "UniCarbKB" ], [ "O88871-1", "protein_xref_unicarbkb", "O88871", "UniCarbKB" ], [ "P31596-1", "protein_xref_unicarbkb", "P31596", "UniCarbKB" ], [ "F1MAA7-1", "protein_xref_unicarbkb", "F1MAA7", "UniCarbKB" ], [ "F1LTJ5-1", "protein_xref_unicarbkb", "F1LTJ5", "UniCarbKB" ], [ "Q62867-1", "protein_xref_unicarbkb", "Q62867", "UniCarbKB" ], [ "Q66HD0-1", "protein_xref_unicarbkb", "Q66HD0", "UniCarbKB" ], [ "Q6Q629-1", "protein_xref_unicarbkb", "Q6Q629", "UniCarbKB" ], [ "P28841-1", "protein_xref_unicarbkb", "P28841", "UniCarbKB" ], [ "P20762-1", "protein_xref_unicarbkb", "P20762", "UniCarbKB" ], [ "P12839-1", "protein_xref_unicarbkb", "P12839", "UniCarbKB" ], [ "Q794F9-1", "protein_xref_unicarbkb", "Q794F9", "UniCarbKB" ], [ "P27615-1", "protein_xref_unicarbkb", "P27615", "UniCarbKB" ], [ "P97546-2", "protein_xref_unicarbkb", "P97546", "UniCarbKB" ], [ "Q63633-1", "protein_xref_unicarbkb", "Q63633", "UniCarbKB" ], [ "P47820-1", "protein_xref_unicarbkb", "P47820", "UniCarbKB" ], [ "P18614-1", "protein_xref_unicarbkb", "P18614", "UniCarbKB" ], [ "Q00959-1", "protein_xref_unicarbkb", "Q00959", "UniCarbKB" ], [ "Q00954-1", "protein_xref_unicarbkb", "Q00954", "UniCarbKB" ], [ "Q99ML5-1", "protein_xref_unicarbkb", "Q99ML5", "UniCarbKB" ], [ "B4F795-1", "protein_xref_unicarbkb", "B4F795", "UniCarbKB" ], [ "P63079-1", "protein_xref_unicarbkb", "P63079", "UniCarbKB" ], [ "P35439-1", "protein_xref_unicarbkb", "P35439", "UniCarbKB" ], [ "Q9JHS6-1", "protein_xref_unicarbkb", "Q9JHS6", "UniCarbKB" ], [ "P15127-1", "protein_xref_unicarbkb", "P15127", "UniCarbKB" ], [ "P55280-1", "protein_xref_unicarbkb", "P55280", "UniCarbKB" ], [ "Q8R4A1-1", "protein_xref_unicarbkb", "Q8R4A1", "UniCarbKB" ], [ "D3ZUL3-1", "protein_xref_unicarbkb", "D3ZUL3", "UniCarbKB" ], [ "P97846-1", "protein_xref_unicarbkb", "P97846", "UniCarbKB" ], [ "Q6P7A9-1", "protein_xref_unicarbkb", "Q6P7A9", "UniCarbKB" ], [ "Q8CGU6-1", "protein_xref_unicarbkb", "Q8CGU6", "UniCarbKB" ], [ "P20236-1", "protein_xref_unicarbkb", "P20236", "UniCarbKB" ], [ "Q00960-1", "protein_xref_unicarbkb", "Q00960", "UniCarbKB" ], [ "P48303-1", "protein_xref_unicarbkb", "P48303", "UniCarbKB" ], [ "D4A416-1", "protein_xref_unicarbkb", "D4A416", "UniCarbKB" ], [ "Q6AYA5-1", "protein_xref_unicarbkb", "Q6AYA5", "UniCarbKB" ], [ "Q91XT9-1", "protein_xref_unicarbkb", "Q91XT9", "UniCarbKB" ], [ "P07340-1", "protein_xref_unicarbkb", "P07340", "UniCarbKB" ], [ "Q05546-1", "protein_xref_unicarbkb", "Q05546", "UniCarbKB" ], [ "F1LNP8-1", "protein_xref_unicarbkb", "F1LNP8", "UniCarbKB" ], [ "Q5EB76-1", "protein_xref_unicarbkb", "Q5EB76", "UniCarbKB" ], [ "Q62609-1", "protein_xref_unicarbkb", "Q62609", "UniCarbKB" ], [ "P46101-1", "protein_xref_unicarbkb", "P46101", "UniCarbKB" ], [ "D4A7M0-1", "protein_xref_unicarbkb", "D4A7M0", "UniCarbKB" ], [ "P97685-1", "protein_xref_unicarbkb", "P97685", "UniCarbKB" ], [ "P29994-1", "protein_xref_unicarbkb", "P29994", "UniCarbKB" ], [ "P19527-1", "protein_xref_unicarbkb", "P19527", "UniCarbKB" ], [ "Q5FVH2-1", "protein_xref_unicarbkb", "Q5FVH2", "UniCarbKB" ], [ "P23576-1", "protein_xref_unicarbkb", "P23576", "UniCarbKB" ], [ "Q62682-1", "protein_xref_unicarbkb", "Q62682", "UniCarbKB" ], [ "P24090-1", "protein_xref_unicarbkb", "P24090", "UniCarbKB" ], [ "P35053-1", "protein_xref_unicarbkb", "P35053", "UniCarbKB" ], [ "B2RYF6-1", "protein_xref_unicarbkb", "B2RYF6", "UniCarbKB" ], [ "Q6AYH6-1", "protein_xref_unicarbkb", "Q6AYH6", "UniCarbKB" ], [ "Q68FQ2-1", "protein_xref_unicarbkb", "Q68FQ2", "UniCarbKB" ], [ "Q63617-1", "protein_xref_unicarbkb", "Q63617", "UniCarbKB" ] ] }, "readme": "Name\n - Rat UniProtKB Xref UniCarbKB\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.986196\n\nModified on\n - 2022-01-19T13:39:55.020830\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. \n\nDescription Domain\n Keywords\n - glycoprotein\n - glycan\n - UniCarbKB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_unicarbkb.csv\n Name: rat_protein_xref_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_unicarbkb.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_unicarbkb.csv" }