{ "bcoid": "GLY_000222", "title": "Rat Protein Recommended Names (UniProtKB)", "description": "The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] ...", "filename": "rat_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q0HA29-1...", "Nicotinamide..." ], [ "Q0HA29-1...", "Nicotinamide..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q0HA29-1", "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2", "NMN/NaMN adenylyltransferase 2", "2.7.7.1" ], [ "Q0HA29-1", "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2", "NMN/NaMN adenylyltransferase 2", "2.7.7.18" ], [ "P30938-1", "Somatostatin receptor type 5", "SS-5-R", "" ], [ "P30938-1", "Somatostatin receptor type 5", "SS5-R", "" ], [ "P30938-1", "Somatostatin receptor type 5", "SS5R", "" ], [ "A0A0G2JVG8-1", "Olfactory receptor", "", "" ], [ "Q07969-1", "Platelet glycoprotein 4", "", "" ], [ "A0A096MJY4-1", "Myocyte-specific enhancer factor 2C", "", "" ], [ "Q62949-1", "Cortistatin", "", "" ], [ "P01946-1", "Hemoglobin subunit alpha-1/2", "", "" ], [ "Q5M9G9-1", "FAST kinase domain-containing protein 4", "", "" ], [ "O35152-1", "BET1-like protein", "", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS-3-R", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS3-R", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS3R", "" ], [ "O35158-1", "Cell adhesion molecule-related/down-regulated by oncogenes", "", "" ], [ "P02761-1", "Major urinary protein", "MUP", "" ], [ "Q9QYH1-1", "MAGUK p55 subfamily member 4", "", "" ], [ "P02764-1", "Alpha-1-acid glycoprotein", "", "" ], [ "P02767-1", "Transthyretin", "", "" ], [ "D4A4W9-1", "60S ribosomal protein L34", "", "" ], [ "D4A4W0-1", "Olfactory receptor", "", "" ], [ "D4A4W2-1", "Multidrug and toxin extrusion protein", "", "" ], [ "D4A4W5-1", "Phospholipid-transporting ATPase", "", "7.6.2.1" ], [ "P39020-1", "Homeobox protein MOX-2", "", "" ], [ "P01237-1", "Prolactin", "PRL", "" ], [ "P01230-1", "Lutropin subunit beta", "Lutropin beta chain", "" ], [ "P09005-1", "Serine protease inhibitor 2.1", "SPI-2.1", "" ], [ "P09006-1", "Serine protease inhibitor A3N", "Serpin A3N", "" ], [ "M0RB75-1", "[Histone H3]-trimethyl-L-lysine(9) demethylase", "", "1.14.11.66" ], [ "Q9JHY8-1", "DNA ligase 1", "", "6.5.1.1" ], [ "Q9JHY1-1", "Junctional adhesion molecule A", "JAM-A", "" ], [ "Q9JHY2-1", "Sideroflexin-3", "", "" ], [ "Q9JHY7-1", "Baculoviral IAP repeat-containing protein 5", "", "" ], [ "Q02874-1", "Core histone macro-H2A.1", "Histone macroH2A1", "" ], [ "Q02874-1", "Core histone macro-H2A.1", "mH2A1", "" ], [ "P08699-1", "Galectin-3", "Gal-3", "" ], [ "P08011-1", "Microsomal glutathione S-transferase 1", "Microsomal GST-1", "2.5.1.18" ], [ "Q05474-1", "Ubiquitin-like protein FUBI", "", "" ], [ "Q99JD4-1", "CLIP-associating protein 2", "", "" ], [ "Q99JD1-1", "Beta-defensin", "", "" ], [ "Q99JD3-1", "Mitochondrial 2-oxodicarboxylate carrier", "", "" ], [ "Q99JD2-1", "Tektin-1", "", "" ], [ "P22002-1", "Voltage-dependent L-type calcium channel subunit alpha-1C", "", "" ], [ "M0R8G6-1", "Ig-like domain-containing protein", "", "" ], [ "Q02294-1", "Voltage-dependent N-type calcium channel subunit alpha-1B", "", "" ], [ "M0R8G2-1", "G_PROTEIN_RECEP_F1_2 domain-containing protein", "", "" ], [ "Q02293-1", "Protein farnesyltransferase subunit beta", "FTase-beta", "2.5.1.58" ], [ "M0R8G9-1", "Olfactory receptor", "", "" ], [ "D3ZGR8-1", "Olfactory receptor", "", "" ], [ "Q8K5E0-1", "Lysophosphatidic acid receptor 3", "LPA receptor 3", "" ], [ "Q8K5E0-1", "Lysophosphatidic acid receptor 3", "LPA-3", "" ], [ "Q460M5-1", "Leucine-rich repeat and fibronectin type-III domain-containing protein 2", "", "" ], [ "Q9R1N3-1", "Sodium bicarbonate cotransporter 3", "", "" ], [ "D3ZIY7-1", "40S ribosomal protein S2", "", "" ], [ "P22006-1", "Seminal vesicle secretory protein 2", "", "" ], [ "D3ZSP1-1", "Small nuclear ribonucleoprotein E", "snRNP-E", "" ], [ "D3ZSP7-1", "E3 ubiquitin-protein ligase TTC3", "", "2.3.2.27" ], [ "P48550-1", "G protein-activated inward rectifier potassium channel 2", "GIRK-2", "" ], [ "D3ZFP4-1", "DNA replication licensing factor MCM3", "", "3.6.4.12" ], [ "Q6B4M5-1", "Partitioning defective 6 homolog alpha", "PAR-6", "" ], [ "Q6B4M5-1", "Partitioning defective 6 homolog alpha", "PAR-6 alpha", "" ], [ "Q6B4M5-1", "Partitioning defective 6 homolog alpha", "PAR-6A", "" ], [ "D4A130-1", "Olfactory receptor", "", "" ], [ "D4A133-1", "H(+)-transporting two-sector ATPase", "", "7.1.2.2" ], [ "D3ZHE6-1", "60S ribosomal protein L14", "", "" ], [ "Q9JIL8-1", "DNA repair protein RAD50", "", "3.6.-.-" ], [ "D3ZCS9-1", "5-hydroxyisourate hydrolase", "HIU hydrolase", "3.5.2.17" ], [ "D3ZCS9-1", "5-hydroxyisourate hydrolase", "HIUHase", "3.5.2.17" ], [ "D3ZCS8-1", "Olfactory receptor", "", "" ], [ "O88664-1", "Serine/threonine-protein kinase TAO1", "", "2.7.11.1" ], [ "P56575-1", "Unknown protein from spot P9 of 2D-PAGE of heart tissue", "", "" ], [ "P00176-1", "Cytochrome P450 2B1", "", "1.14.14.1" ], [ "Q6P5P5-1", "Mesoderm-specific transcript homolog protein", "", "3.-.-.-" ], [ "Q6P5P3-1", "Tetratricopeptide repeat protein 9C", "TPR repeat protein 9C", "" ], [ "M0R6I9-1", "Olfactory receptor", "", "" ], [ "P09660-1", "Acetylcholine receptor subunit epsilon", "", "" ], [ "P32301-1", "Glucagon-like peptide 1 receptor", "GLP-1 receptor", "" ], [ "P32301-1", "Glucagon-like peptide 1 receptor", "GLP-1-R", "" ], [ "P32301-1", "Glucagon-like peptide 1 receptor", "GLP-1R", "" ], [ "F1LP13-1", "Protein-tyrosine-phosphatase", "", "3.1.3.48" ], [ "A0A0G2JVZ5-1", "Olfactory receptor", "", "" ], [ "Q9QYH7-1", "Appetite-regulating hormone", "", "" ], [ "B1WC34-1", "Glucosidase 2 subunit beta", "", "" ] ] }, "readme": "Name\n - Rat Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.950487\n\nModified on\n - 2022-01-19T11:27:40.272500\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_recnames.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_recnames.csv\n Name: rat_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_recnames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_recnames.csv" }