{ "bcoid": "GLY_000129", "title": "Human UniProtKB Xref UniCarbKB", "description": "The Human UniProtKB Xref UniCarbKB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Unicarbkb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9UEF7-1...", "protein_xref..." ], [ "P01042-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9UEF7-1", "protein_xref_unicarbkb", "Q9UEF7", "UniCarbKB" ], [ "P01042-1", "protein_xref_unicarbkb", "P01042", "UniCarbKB" ], [ "Q86YL7-1", "protein_xref_unicarbkb", "Q86YL7", "UniCarbKB" ], [ "Q9Y644-1", "protein_xref_unicarbkb", "Q9Y644", "UniCarbKB" ], [ "Q92896-1", "protein_xref_unicarbkb", "Q92896", "UniCarbKB" ], [ "P0DN86-1", "protein_xref_unicarbkb", "P0DN86", "UniCarbKB" ], [ "P05556-1", "protein_xref_unicarbkb", "P05556", "UniCarbKB" ], [ "Q8IWV2-1", "protein_xref_unicarbkb", "Q8IWV2", "UniCarbKB" ], [ "P08962-1", "protein_xref_unicarbkb", "P08962", "UniCarbKB" ], [ "O95445-1", "protein_xref_unicarbkb", "O95445", "UniCarbKB" ], [ "Q6UVK1-1", "protein_xref_unicarbkb", "Q6UVK1", "UniCarbKB" ], [ "Q8WWT9-1", "protein_xref_unicarbkb", "Q8WWT9", "UniCarbKB" ], [ "Q16853-1", "protein_xref_unicarbkb", "Q16853", "UniCarbKB" ], [ "Q08629-1", "protein_xref_unicarbkb", "Q08629", "UniCarbKB" ], [ "O14594-1", "protein_xref_unicarbkb", "O14594", "UniCarbKB" ], [ "Q17RP2-1", "protein_xref_unicarbkb", "Q17RP2", "UniCarbKB" ], [ "Q15223-1", "protein_xref_unicarbkb", "Q15223", "UniCarbKB" ], [ "Q9Y240-1", "protein_xref_unicarbkb", "Q9Y240", "UniCarbKB" ], [ "Q02083-1", "protein_xref_unicarbkb", "Q02083", "UniCarbKB" ], [ "P07942-1", "protein_xref_unicarbkb", "P07942", "UniCarbKB" ], [ "Q99808-1", "protein_xref_unicarbkb", "Q99808", "UniCarbKB" ], [ "P27169-1", "protein_xref_unicarbkb", "P27169", "UniCarbKB" ], [ "Q9UBS9-1", "protein_xref_unicarbkb", "Q9UBS9", "UniCarbKB" ], [ "Q02325-1", "protein_xref_unicarbkb", "Q02325", "UniCarbKB" ], [ "Q16581-1", "protein_xref_unicarbkb", "Q16581", "UniCarbKB" ], [ "Q96KA5-1", "protein_xref_unicarbkb", "Q96KA5", "UniCarbKB" ], [ "O43866-1", "protein_xref_unicarbkb", "O43866", "UniCarbKB" ], [ "P82987-1", "protein_xref_unicarbkb", "P82987", "UniCarbKB" ], [ "Q07954-1", "protein_xref_unicarbkb", "Q07954", "UniCarbKB" ], [ "O96005-1", "protein_xref_unicarbkb", "O96005", "UniCarbKB" ], [ "Q6UXD5-1", "protein_xref_unicarbkb", "Q6UXD5", "UniCarbKB" ], [ "Q09327-1", "protein_xref_unicarbkb", "Q09327", "UniCarbKB" ], [ "Q09328-1", "protein_xref_unicarbkb", "Q09328", "UniCarbKB" ], [ "P28827-1", "protein_xref_unicarbkb", "P28827", "UniCarbKB" ], [ "O94905-1", "protein_xref_unicarbkb", "O94905", "UniCarbKB" ], [ "Q9BWV1-1", "protein_xref_unicarbkb", "Q9BWV1", "UniCarbKB" ], [ "Q5JPE7-1", "protein_xref_unicarbkb", "Q5JPE7", "UniCarbKB" ], [ "P01266-1", "protein_xref_unicarbkb", "P01266", "UniCarbKB" ], [ "O76095-1", "protein_xref_unicarbkb", "O76095", "UniCarbKB" ], [ "Q8WUM9-1", "protein_xref_unicarbkb", "Q8WUM9", "UniCarbKB" ], [ "Q9Y5F2-1", "protein_xref_unicarbkb", "Q9Y5F2", "UniCarbKB" ], [ "P50454-1", "protein_xref_unicarbkb", "P50454", "UniCarbKB" ], [ "Q13433-1", "protein_xref_unicarbkb", "Q13433", "UniCarbKB" ], [ "Q13439-1", "protein_xref_unicarbkb", "Q13439", "UniCarbKB" ], [ "P08575-3", "protein_xref_unicarbkb", "P08575", "UniCarbKB" ], [ "Q9Y6Z7-1", "protein_xref_unicarbkb", "Q9Y6Z7", "UniCarbKB" ], [ "Q9UKU6-1", "protein_xref_unicarbkb", "Q9UKU6", "UniCarbKB" ], [ "Q9UKU9-1", "protein_xref_unicarbkb", "Q9UKU9", "UniCarbKB" ], [ "P02458-2", "protein_xref_unicarbkb", "P02458", "UniCarbKB" ], [ "P02452-1", "protein_xref_unicarbkb", "P02452", "UniCarbKB" ], [ "Q13530-1", "protein_xref_unicarbkb", "Q13530", "UniCarbKB" ], [ "P20645-1", "protein_xref_unicarbkb", "P20645", "UniCarbKB" ], [ "Q8IXL6-1", "protein_xref_unicarbkb", "Q8IXL6", "UniCarbKB" ], [ "P06756-1", "protein_xref_unicarbkb", "P06756", "UniCarbKB" ], [ "Q02985-1", "protein_xref_unicarbkb", "Q02985", "UniCarbKB" ], [ "Q6NUT3-1", "protein_xref_unicarbkb", "Q6NUT3", "UniCarbKB" ], [ "P27824-1", "protein_xref_unicarbkb", "P27824", "UniCarbKB" ], [ "Q99650-1", "protein_xref_unicarbkb", "Q99650", "UniCarbKB" ], [ "Q9H173-1", "protein_xref_unicarbkb", "Q9H173", "UniCarbKB" ], [ "Q96D15-1", "protein_xref_unicarbkb", "Q96D15", "UniCarbKB" ], [ "Q6P4F1-1", "protein_xref_unicarbkb", "Q6P4F1", "UniCarbKB" ], [ "Q8NFI4-1", "protein_xref_unicarbkb", "Q8NFI4", "UniCarbKB" ], [ "P05090-1", "protein_xref_unicarbkb", "P05090", "UniCarbKB" ], [ "Q9BZM4-1", "protein_xref_unicarbkb", "Q9BZM4", "UniCarbKB" ], [ "O75487-1", "protein_xref_unicarbkb", "O75487", "UniCarbKB" ], [ "Q6W4X9-1", "protein_xref_unicarbkb", "Q6W4X9", "UniCarbKB" ], [ "Q12805-1", "protein_xref_unicarbkb", "Q12805", "UniCarbKB" ], [ "P26842-1", "protein_xref_unicarbkb", "P26842", "UniCarbKB" ], [ "P15814-1", "protein_xref_unicarbkb", "P15814", "UniCarbKB" ], [ "P10912-1", "protein_xref_unicarbkb", "P10912", "UniCarbKB" ], [ "Q6UW63-1", "protein_xref_unicarbkb", "Q6UW63", "UniCarbKB" ], [ "Q9NS62-1", "protein_xref_unicarbkb", "Q9NS62", "UniCarbKB" ], [ "Q8N307-1", "protein_xref_unicarbkb", "Q8N307", "UniCarbKB" ], [ "P35354-1", "protein_xref_unicarbkb", "P35354", "UniCarbKB" ], [ "Q9BXN1-1", "protein_xref_unicarbkb", "Q9BXN1", "UniCarbKB" ], [ "Q9BXN2-1", "protein_xref_unicarbkb", "Q9BXN2", "UniCarbKB" ], [ "P04156-1", "protein_xref_unicarbkb", "P04156", "UniCarbKB" ], [ "P43652-1", "protein_xref_unicarbkb", "P43652", "UniCarbKB" ], [ "P29120-1", "protein_xref_unicarbkb", "P29120", "UniCarbKB" ], [ "P29122-1", "protein_xref_unicarbkb", "P29122", "UniCarbKB" ], [ "O95208-1", "protein_xref_unicarbkb", "O95208", "UniCarbKB" ], [ "P36955-1", "protein_xref_unicarbkb", "P36955", "UniCarbKB" ], [ "P27487-1", "protein_xref_unicarbkb", "P27487", "UniCarbKB" ], [ "P30533-1", "protein_xref_unicarbkb", "P30533", "UniCarbKB" ] ] }, "readme": "Name\n - Human UniProtKB Xref UniCarbKB\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T16:50:35.816502\n\nModified on\n - 2022-01-19T11:07:39.329949\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref UniCarbKB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. \n\nDescription Domain\n Keywords\n - glycoprotein\n - glycan\n - UniCarbKB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_unicarbkb.csv\n Name: human_protein_xref_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_unicarbkb.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_unicarbkb.csv" }