{ "bcoid": "GLY_000117", "title": "Human UniProtKB Xref PANTHER", "description": "The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_panther", "PTHR11817", "PTHR11817" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618:SF4", "PTHR11618:SF4" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618", "PTHR11618" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320", "PTHR23320" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320:SF8", "PTHR23320:SF8" ], [ "A2RU30-1", "protein_xref_panther", "PTHR17469:SF1", "PTHR17469:SF1" ], [ "A2RU30-1", "protein_xref_panther", "PTHR17469", "PTHR17469" ], [ "Q6UWY5-1", "protein_xref_panther", "PTHR23192:SF13", "PTHR23192:SF13" ], [ "Q96J66-1", "protein_xref_panther", "PTHR24223:SF168", "PTHR24223:SF168" ], [ "Q96J65-1", "protein_xref_panther", "PTHR24223:SF10", "PTHR24223:SF10" ], [ "Q6UW68-1", "protein_xref_panther", "PTHR46916", "PTHR46916" ], [ "Q53F39-1", "protein_xref_panther", "PTHR13315", "PTHR13315" ], [ "P40429-1", "protein_xref_panther", "PTHR11545", "PTHR11545" ], [ "P62873-1", "protein_xref_panther", "PTHR19850", "PTHR19850" ], [ "Q9Y691-1", "protein_xref_panther", "PTHR10258", "PTHR10258" ], [ "Q9H2I8-1", "protein_xref_panther", "PTHR46282", "PTHR46282" ], [ "Q969N2-1", "protein_xref_panther", "PTHR12959", "PTHR12959" ], [ "P09471-1", "protein_xref_panther", "PTHR10218", "PTHR10218" ], [ "Q9NXE4-1", "protein_xref_panther", "PTHR12988", "PTHR12988" ], [ "P13804-1", "protein_xref_panther", "PTHR43153", "PTHR43153" ], [ "Q9NQU5-1", "protein_xref_panther", "PTHR45832:SF3", "PTHR45832:SF3" ], [ "H0YL14-1", "protein_xref_panther", "PTHR18884:SF108", "PTHR18884:SF108" ], [ "Q96L93-1", "protein_xref_panther", "PTHR24115", "PTHR24115" ], [ "Q969W1-1", "protein_xref_panther", "PTHR12246", "PTHR12246" ], [ "Q13228-1", "protein_xref_panther", "PTHR23300", "PTHR23300" ], [ "P29353-1", "protein_xref_panther", "PTHR10337:SF2", "PTHR10337:SF2" ], [ "Q8N865-1", "protein_xref_panther", "PTHR31393", "PTHR31393" ], [ "Q9Y547-1", "protein_xref_panther", "PTHR33906", "PTHR33906" ], [ "Q92562-1", "protein_xref_panther", "PTHR45738", "PTHR45738" ], [ "Q86VY4-1", "protein_xref_panther", "PTHR11875", "PTHR11875" ], [ "Q86VY9-1", "protein_xref_panther", "PTHR31815", "PTHR31815" ], [ "Q9Y5S9-1", "protein_xref_panther", "PTHR45894", "PTHR45894" ], [ "P41250-1", "protein_xref_panther", "PTHR10745", "PTHR10745" ], [ "O15078-1", "protein_xref_panther", "PTHR18879", "PTHR18879" ], [ "Q8TF17-1", "protein_xref_panther", "PTHR22647", "PTHR22647" ], [ "Q3C1V0-1", "protein_xref_panther", "PTHR23320", "PTHR23320" ], [ "Q96QE4-1", "protein_xref_panther", "PTHR23045", "PTHR23045" ], [ "Q99519-1", "protein_xref_panther", "PTHR10628", "PTHR10628" ], [ "Q96RU7-1", "protein_xref_panther", "PTHR22961", "PTHR22961" ], [ "Q96RU7-1", "protein_xref_panther", "PTHR22961:SF14", "PTHR22961:SF14" ], [ "O75448-1", "protein_xref_panther", "PTHR12898", "PTHR12898" ], [ "Q96RU3-1", "protein_xref_panther", "PTHR15735:SF13", "PTHR15735:SF13" ], [ "Q96RU8-1", "protein_xref_panther", "PTHR22961:SF17", "PTHR22961:SF17" ], [ "Q96RU8-1", "protein_xref_panther", "PTHR22961", "PTHR22961" ], [ "Q96IK0-1", "protein_xref_panther", "PTHR31034", "PTHR31034" ], [ "Q7Z7G2-1", "protein_xref_panther", "PTHR16705", "PTHR16705" ], [ "Q5VYV7-1", "protein_xref_panther", "PTHR28557", "PTHR28557" ], [ "Q8N6T0-1", "protein_xref_panther", "PTHR14652", "PTHR14652" ], [ "Q9UIF3-1", "protein_xref_panther", "PTHR19960", "PTHR19960" ], [ "Q8N7N1-1", "protein_xref_panther", "PTHR14614", "PTHR14614" ], [ "P16520-1", "protein_xref_panther", "PTHR19850", "PTHR19850" ], [ "Q9Y296-1", "protein_xref_panther", "PTHR23249", "PTHR23249" ], [ "Q9Y294-1", "protein_xref_panther", "PTHR12040", "PTHR12040" ], [ "Q99613-1", "protein_xref_panther", "PTHR13937", "PTHR13937" ], [ "P35637-1", "protein_xref_panther", "PTHR23238", "PTHR23238" ], [ "P35637-1", "protein_xref_panther", "PTHR23238:SF5", "PTHR23238:SF5" ], [ "Q9UPN3-1", "protein_xref_panther", "PTHR23169", "PTHR23169" ], [ "Q99613-1", "protein_xref_panther", "PTHR13937", "PTHR13937" ], [ "O00458-1", "protein_xref_panther", "PTHR12354", "PTHR12354" ], [ "Q6ICB0-1", "protein_xref_panther", "PTHR12378", "PTHR12378" ], [ "O75635-1", "protein_xref_panther", "PTHR11461", "PTHR11461" ], [ "P02144-1", "protein_xref_panther", "PTHR47132", "PTHR47132" ], [ "Q6UXY1-1", "protein_xref_panther", "PTHR14206", "PTHR14206" ], [ "Q6UXY1-1", "protein_xref_panther", "PTHR14206:SF5", "PTHR14206:SF5" ], [ "P02144-1", "protein_xref_panther", "PTHR47132", "PTHR47132" ], [ "Q8TD31-1", "protein_xref_panther", "PTHR46822", "PTHR46822" ], [ "Q92925-1", "protein_xref_panther", "PTHR13844:SF2", "PTHR13844:SF2" ], [ "O00501-1", "protein_xref_panther", "PTHR12002", "PTHR12002" ], [ "Q9BVK2-1", "protein_xref_panther", "PTHR12413", "PTHR12413" ], [ "Q9BVK2-1", "protein_xref_panther", "PTHR12413:SF2", "PTHR12413:SF2" ], [ "P56202-1", "protein_xref_panther", "PTHR12411:SF101", "PTHR12411:SF101" ], [ "Q13283-1", "protein_xref_panther", "PTHR10693:SF21", "PTHR10693:SF21" ], [ "Q13283-1", "protein_xref_panther", "PTHR10693", "PTHR10693" ], [ "P35659-1", "protein_xref_panther", "PTHR13468", "PTHR13468" ], [ "Q8IYD8-1", "protein_xref_panther", "PTHR14025:SF20", "PTHR14025:SF20" ], [ "Q8NFD5-1", "protein_xref_panther", "PTHR12656", "PTHR12656" ], [ "Q8NFD5-1", "protein_xref_panther", "PTHR12656:SF11", "PTHR12656:SF11" ], [ "Q8IVD9-1", "protein_xref_panther", "PTHR12356:SF19", "PTHR12356:SF19" ], [ "Q8IVD9-1", "protein_xref_panther", "PTHR12356", "PTHR12356" ], [ "Q96C90-1", "protein_xref_panther", "PTHR16188", "PTHR16188" ], [ "O95070-1", "protein_xref_panther", "PTHR14083", "PTHR14083" ], [ "P02511-1", "protein_xref_panther", "PTHR45640", "PTHR45640" ], [ "O00165-1", "protein_xref_panther", "PTHR14938", "PTHR14938" ], [ "P19235-1", "protein_xref_panther", "PTHR23037:SF28", "PTHR23037:SF28" ] ] }, "readme": "Name\n - Human UniProtKB Xref PANTHER\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T15:04:33.347577\n\nModified on\n - 2022-01-19T10:45:14.643111\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_panther.csv\n Name: human_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_panther.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_panther.csv" }