{ "bcoid": "GLY_000102", "title": "Human UniProtKB Xref HGNC", "description": "The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_hgnc.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Hgnc cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_hgnc", "9020", "PKLR" ], [ "Q92994-1", "protein_xref_hgnc", "11551", "BRF1" ], [ "Q9Y2R9-1", "protein_xref_hgnc", "14499", "MRPS7" ], [ "Q92614-1", "protein_xref_hgnc", "31104", "MYO18A" ], [ "P10242-1", "protein_xref_hgnc", "7545", "MYB" ], [ "Q9GZW8-1", "protein_xref_hgnc", "13378", "MS4A7" ], [ "O14817-1", "protein_xref_hgnc", "11859", "TSPAN4" ], [ "A2RU30-1", "protein_xref_hgnc", "29109", "TESPA1" ], [ "Q6UWY5-1", "protein_xref_hgnc", "24473", "OLFML1" ], [ "Q6IQ23-1", "protein_xref_hgnc", "27049", "PLEKHA7" ], [ "Q8N6H7-1", "protein_xref_hgnc", "13504", "ARFGAP2" ], [ "Q96J66-1", "protein_xref_hgnc", "14639", "ABCC11" ], [ "Q96J65-1", "protein_xref_hgnc", "14640", "ABCC12" ], [ "P25705-1", "protein_xref_hgnc", "823", "ATP5F1A" ], [ "Q6UW68-1", "protein_xref_hgnc", "29631", "TMEM205" ], [ "Q9BUZ4-1", "protein_xref_hgnc", "12034", "TRAF4" ], [ "Q8NC06-1", "protein_xref_hgnc", "23337", "ACBD4" ], [ "Q8IYT4-1", "protein_xref_hgnc", "25387", "KATNAL2" ], [ "Q53F39-1", "protein_xref_hgnc", "15988", "MPPE1" ], [ "A6NC51-1", "protein_xref_hgnc", "34415", "TMEM150B" ], [ "Q13829-1", "protein_xref_hgnc", "11894", "TNFAIP1" ], [ "Q8NBW4-1", "protein_xref_hgnc", "26907", "SLC38A9" ], [ "Q14766-1", "protein_xref_hgnc", "6714", "LTBP1" ], [ "P40424-1", "protein_xref_hgnc", "8632", "PBX1" ], [ "P40425-1", "protein_xref_hgnc", "8633", "PBX2" ], [ "P40426-1", "protein_xref_hgnc", "8634", "PBX3" ], [ "P40429-1", "protein_xref_hgnc", "10304", "RPL13A" ], [ "P62873-1", "protein_xref_hgnc", "4396", "GNB1" ], [ "P11310-1", "protein_xref_hgnc", "89", "ACADM" ], [ "Q9Y691-1", "protein_xref_hgnc", "6286", "KCNMB2" ], [ "Q9H2I8-1", "protein_xref_hgnc", "23405", "LRMDA" ], [ "O60506-1", "protein_xref_hgnc", "16918", "SYNCRIP" ], [ "Q969N2-1", "protein_xref_hgnc", "14938", "PIGT" ], [ "P09471-1", "protein_xref_hgnc", "4389", "GNAO1" ], [ "P07237-1", "protein_xref_hgnc", "8548", "P4HB" ], [ "Q9NXE4-1", "protein_xref_hgnc", "32949", "SMPD4" ], [ "Q9Y4J8-1", "protein_xref_hgnc", "3057", "DTNA" ], [ "P13804-1", "protein_xref_hgnc", "3481", "ETFA" ], [ "Q5ZPR3-1", "protein_xref_hgnc", "19137", "CD276" ], [ "Q9NQU5-1", "protein_xref_hgnc", "16061", "PAK6" ], [ "H0YL14-1", "protein_xref_hgnc", "31009", "TMEM250" ], [ "P29692-1", "protein_xref_hgnc", "3211", "EEF1D" ], [ "Q9GZS3-1", "protein_xref_hgnc", "30300", "WDR61" ], [ "Q9BXR3-1", "protein_xref_hgnc", "13915", "ERVK-6" ], [ "Q9BXR3-1", "protein_xref_hgnc", "13915", "ERVK-6" ], [ "Q96R06-1", "protein_xref_hgnc", "13452", "SPAG5" ], [ "Q96L93-1", "protein_xref_hgnc", "15869", "KIF16B" ], [ "Q969W1-1", "protein_xref_hgnc", "20714", "ZDHHC16" ], [ "Q13228-1", "protein_xref_hgnc", "10719", "SELENBP1" ], [ "P02741-1", "protein_xref_hgnc", "2367", "CRP" ], [ "P29353-1", "protein_xref_hgnc", "10840", "SHC1" ], [ "Q5VVP1-1", "protein_xref_hgnc", "32006", "SPATA31A6" ], [ "Q9H4G0-1", "protein_xref_hgnc", "3378", "EPB41L1" ], [ "Q8N865-1", "protein_xref_hgnc", "21722", "C7orf31" ], [ "Q9Y547-1", "protein_xref_hgnc", "25019", "HSPB11" ], [ "A6NIR3-1", "protein_xref_hgnc", "23467", "AGAP5" ], [ "Q8N720-1", "protein_xref_hgnc", "30899", "ZNF655" ], [ "Q92562-1", "protein_xref_hgnc", "16873", "FIG4" ], [ "Q86VY4-1", "protein_xref_hgnc", "29367", "TSPYL5" ], [ "Q86VY9-1", "protein_xref_hgnc", "21075", "TMEM200A" ], [ "Q9Y5S9-1", "protein_xref_hgnc", "9905", "RBM8A" ], [ "P38935-1", "protein_xref_hgnc", "5542", "IGHMBP2" ], [ "P41250-1", "protein_xref_hgnc", "4162", "GARS1" ], [ "O15078-1", "protein_xref_hgnc", "29021", "CEP290" ], [ "Q8TF17-1", "protein_xref_hgnc", "29427", "SH3TC2" ], [ "Q9BYV8-1", "protein_xref_hgnc", "12370", "CEP41" ], [ "Q8TB36-1", "protein_xref_hgnc", "15968", "GDAP1" ], [ "O60733-1", "protein_xref_hgnc", "9039", "PLA2G6" ], [ "P19075-1", "protein_xref_hgnc", "11855", "TSPAN8" ], [ "Q8NI17-1", "protein_xref_hgnc", "18969", "IL31RA" ], [ "Q3C1V0-1", "protein_xref_hgnc", "37636", "MS4A18" ], [ "Q96QE4-1", "protein_xref_hgnc", "29070", "LRRC37B" ], [ "Q9P0K1-1", "protein_xref_hgnc", "201", "ADAM22" ], [ "Q99519-1", "protein_xref_hgnc", "7758", "NEU1" ], [ "O15417-1", "protein_xref_hgnc", "11962", "TNRC18" ], [ "Q96RU7-1", "protein_xref_hgnc", "16228", "TRIB3" ], [ "P49841-1", "protein_xref_hgnc", "4617", "GSK3B" ], [ "O75448-1", "protein_xref_hgnc", "22963", "MED24" ], [ "Q96RU3-1", "protein_xref_hgnc", "17069", "FNBP1" ], [ "Q96RU2-1", "protein_xref_hgnc", "12625", "USP28" ], [ "O14964-1", "protein_xref_hgnc", "4897", "HGS" ], [ "Q01813-1", "protein_xref_hgnc", "8878", "PFKP" ], [ "Q96RU8-1", "protein_xref_hgnc", "16891", "TRIB1" ], [ "Q96IK0-1", "protein_xref_hgnc", "28653", "TMEM101" ] ] }, "readme": "Name\n - Human UniProtKB Xref HGNC\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T12:12:30.919588\n\nModified on\n - 2022-01-18T11:36:38.786400\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to HGNC accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The HUGO Gene Nomenclature Committee is a committee of the Human Genome Organization that sets the standards for human gene nomenclature. The HGNC approves a unique and meaningful name for every known human gene, based on a query of experts. \n\nDescription Domain\n Keywords\n - HGNC\n - gene symbol\n - gene name\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to HGNC database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_hgnc.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.csv\n Name: human_protein_xref_hgnc.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_hgnc.csv" }