{ "bcoid": "GLY_000091", "title": "Mouse UniProtKB Xref Bgee", "description": "The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_bgee", "ENSMUSG00000068040", "Expressed in humerus cartilage element and 294 other tissues" ], [ "Q8BH27-1", "protein_xref_bgee", "ENSMUSG00000039270", "Expressed in utricle of membranous labyrinth and 263 other tissues" ], [ "Q8BH26-1", "protein_xref_bgee", "ENSMUSG00000046675", "Expressed in islet of Langerhans and 78 other tissues" ], [ "E9Q287-1", "protein_xref_bgee", "ENSMUSG00000043635", "Expressed in cortical plate and 75 other tissues" ], [ "Q922G0-1", "protein_xref_bgee", "ENSMUSG00000032449", "Expressed in metanephric cortical collecting duct and 308 other tissues" ], [ "O35453-1", "protein_xref_bgee", "ENSMUSG00000001249", "Expressed in proximal tubule and 232 other tissues" ], [ "Q80T32-1", "protein_xref_bgee", "ENSMUSG00000044017", "Expressed in urinary bladder and 160 other tissues" ], [ "B2RXV4-1", "protein_xref_bgee", "ENSMUSG00000066595", "Expressed in small intestine and 257 other tissues" ], [ "P62492-1", "protein_xref_bgee", "ENSMUSG00000004771", "Expressed in kidney and 320 other tissues" ], [ "E9Q3P4-1", "protein_xref_bgee", "ENSMUSG00000026605", "Expressed in primary oocyte and 228 other tissues" ], [ "P63166-1", "protein_xref_bgee", "ENSMUSG00000026021", "Expressed in embryonic facial prominence and 91 other tissues" ], [ "A0A087WPJ1-1", "protein_xref_bgee", "ENSMUSG00000056912", "Expressed in spermatid and 51 other tissues" ], [ "B2RX88-1", "protein_xref_bgee", "ENSMUSG00000056763", "Expressed in metanephric cortical collecting duct and 279 other tissues" ], [ "A0A087WRQ3-1", "protein_xref_bgee", "ENSMUSG00000076758", "Expressed in thymus and 23 other tissues" ], [ "A5H0M4-1", "protein_xref_bgee", "ENSMUSG00000063932", "Expressed in spermatocyte and 15 other tissues" ], [ "P03899-1", "protein_xref_bgee", "ENSMUSG00000064360", "Expressed in thymus and 71 other tissues" ], [ "O35153-1", "protein_xref_bgee", "ENSMUSG00000025484", "Expressed in pancreas and 305 other tissues" ], [ "P03893-1", "protein_xref_bgee", "ENSMUSG00000064345", "Expressed in muscle tissue and 71 other tissues" ], [ "Q9QYH9-1", "protein_xref_bgee", "ENSMUSG00000005824", "Expressed in granulocyte and 52 other tissues" ], [ "P52479-1", "protein_xref_bgee", "ENSMUSG00000031826", "Expressed in epiblast (generic) and 316 other tissues" ], [ "P02762-1", "protein_xref_bgee", "ENSMUSG00000078673", "Expressed in liver and 35 other tissues" ], [ "Q9QYH6-1", "protein_xref_bgee", "ENSMUSG00000025151", "Expressed in placenta and 331 other tissues" ], [ "Q08AU7-1", "protein_xref_bgee", "ENSMUSG00000025141", "Expressed in muscle tissue and 98 other tissues" ], [ "Q5EBH1-1", "protein_xref_bgee", "ENSMUSG00000026430", "Expressed in thymus and 282 other tissues" ], [ "O35309-1", "protein_xref_bgee", "ENSMUSG00000026946", "Expressed in jejunum and 259 other tissues" ], [ "Q80YU0-1", "protein_xref_bgee", "ENSMUSG00000055882", "Expressed in testis and 52 other tissues" ], [ "Q8BTY1-1", "protein_xref_bgee", "ENSMUSG00000039648", "Expressed in esophagus and 302 other tissues" ], [ "Q5SRT8-1", "protein_xref_bgee", "ENSMUSG00000044707", "Expressed in embryonic post-anal tail and 187 other tissues" ], [ "P70419-1", "protein_xref_bgee", "ENSMUSG00000026994", "Expressed in parotid gland and 227 other tissues" ], [ "Q9EP78-1", "protein_xref_bgee", "ENSMUSG00000037347", "Expressed in proximal tubule and 182 other tissues" ], [ "Q9EP79-1", "protein_xref_bgee", "ENSMUSG00000060816", "Expressed in testis and 7 other tissues" ], [ "Q3URK3-1", "protein_xref_bgee", "ENSMUSG00000047146", "Expressed in embryonic stem cell and 230 other tissues" ], [ "Q9EP72-1", "protein_xref_bgee", "ENSMUSG00000055943", "Expressed in liver and 296 other tissues" ], [ "Q9EP73-1", "protein_xref_bgee", "ENSMUSG00000016496", "Expressed in blood and 136 other tissues" ], [ "Q9EP71-1", "protein_xref_bgee", "ENSMUSG00000022246", "Expressed in renal corpuscle and 287 other tissues" ], [ "Q9EP75-1", "protein_xref_bgee", "ENSMUSG00000024292", "Expressed in jejunum and 79 other tissues" ], [ "Q8VF62-1", "protein_xref_bgee", "ENSMUSG00000066749", "Expressed in zygote and 15 other tissues" ], [ "Q8CHS4-1", "protein_xref_bgee", "ENSMUSG00000064247", "Expressed in substantia nigra and 179 other tissues" ], [ "D3YWQ0-1", "protein_xref_bgee", "ENSMUSG00000038665", "Expressed in cerebral cortex and 103 other tissues" ], [ "P30282-1", "protein_xref_bgee", "ENSMUSG00000034165", "Expressed in thymus and 321 other tissues" ], [ "P97411-1", "protein_xref_bgee", "ENSMUSG00000062995", "Expressed in spermatid and 275 other tissues" ], [ "Q3UHI0-1", "protein_xref_bgee", "ENSMUSG00000058690", "Expressed in dorsal root ganglion and 297 other tissues" ], [ "Q80TT2-1", "protein_xref_bgee", "ENSMUSG00000047507", "Expressed in hypothalamus and 143 other tissues" ], [ "S4R213-1", "protein_xref_bgee", "ENSMUSG00000070683", "Expressed in retinal neural layer and 15 other tissues" ], [ "Q91VV4-1", "protein_xref_bgee", "ENSMUSG00000027901", "Expressed in lymph node and 190 other tissues" ], [ "P53702-1", "protein_xref_bgee", "ENSMUSG00000031352", "Expressed in myocardium of ventricle and 303 other tissues" ], [ "Q9Z2V6-1", "protein_xref_bgee", "ENSMUSG00000008855", "Expressed in olfactory bulb and 307 other tissues" ], [ "O08911-1", "protein_xref_bgee", "ENSMUSG00000022610", "Expressed in muscle tissue and 245 other tissues" ], [ "Q9CWR2-1", "protein_xref_bgee", "ENSMUSG00000055067", "Expressed in embryo and 196 other tissues" ], [ "Q80WC9-1", "protein_xref_bgee", "ENSMUSG00000055923", "Expressed in indifferent gonad and 256 other tissues" ], [ "O08912-1", "protein_xref_bgee", "ENSMUSG00000000420", "Expressed in embryo and 352 other tissues" ], [ "O08915-1", "protein_xref_bgee", "ENSMUSG00000024847", "Expressed in ear vesicle and 309 other tissues" ], [ "O08914-1", "protein_xref_bgee", "ENSMUSG00000034171", "Expressed in cardiac ventricle and 246 other tissues" ], [ "O08917-1", "protein_xref_bgee", "ENSMUSG00000059714", "Expressed in granulocyte and 338 other tissues" ], [ "O08918-1", "protein_xref_bgee", "ENSMUSG00000029385", "Expressed in thymus and 304 other tissues" ], [ "Q80WC1-1", "protein_xref_bgee", "ENSMUSG00000038538", "Expressed in spleen and 271 other tissues" ], [ "Q80WC7-1", "protein_xref_bgee", "ENSMUSG00000029722", "Expressed in cerebellum and 290 other tissues" ], [ "Q9JHY4-1", "protein_xref_bgee", "ENSMUSG00000018211", "Expressed in right kidney and 95 other tissues" ], [ "Q8BYW1-1", "protein_xref_bgee", "ENSMUSG00000030047", "Expressed in granulocyte and 166 other tissues" ], [ "G5E8Q8-1", "protein_xref_bgee", "ENSMUSG00000056492", "Expressed in right lung and 254 other tissues" ], [ "Q8C0L9-1", "protein_xref_bgee", "ENSMUSG00000027346", "Expressed in gastrocnemius and 312 other tissues" ], [ "Q8BTJ4-1", "protein_xref_bgee", "ENSMUSG00000023961", "Expressed in substantia nigra and 266 other tissues" ], [ "P59708-1", "protein_xref_bgee", "ENSMUSG00000037361", "Expressed in vestibular organ and 311 other tissues" ], [ "Q3TX08-1", "protein_xref_bgee", "ENSMUSG00000001909", "Expressed in spermatocyte and 309 other tissues" ], [ "E9PYR1-1", "protein_xref_bgee", "ENSMUSG00000066640", "Expressed in superior cervical ganglion and 116 other tissues" ], [ "P04760-1", "protein_xref_bgee", "ENSMUSG00000026253", "Expressed in lens of camera-type eye and 94 other tissues" ], [ "P59808-1", "protein_xref_bgee", "ENSMUSG00000015305", "Expressed in urinary bladder urothelium and 306 other tissues" ], [ "F8VQK3-1", "protein_xref_bgee", "ENSMUSG00000041624", "Expressed in cerebral cortex and 73 other tissues" ], [ "Q91UZ1-1", "protein_xref_bgee", "ENSMUSG00000039943", "Expressed in saliva-secreting gland and 302 other tissues" ], [ "Q91UZ1-1", "protein_xref_bgee", "ENSMUSG00000039943", "Expressed in saliva-secreting gland and 302 other tissues" ], [ "Q9R1N9-1", "protein_xref_bgee", "ENSMUSG00000058806", "Expressed in cardiac ventricle and 224 other tissues" ], [ "A2AT96-1", "protein_xref_bgee", "ENSMUSG00000075161", "Expressed in proximal tubule and 3 other tissues" ], [ "Q9D387-1", "protein_xref_bgee", "ENSMUSG00000027270", "Expressed in medial vestibular nucleus and 165 other tissues" ], [ "Q3V3Q4-1", "protein_xref_bgee", "ENSMUSG00000066677", "Expressed in spleen and 53 other tissues" ], [ "B1ASB6-1", "protein_xref_bgee", "ENSMUSG00000028784", "Expressed in secondary oocyte and 46 other tissues" ], [ "Q9D516-1", "protein_xref_bgee", "ENSMUSG00000004994", "Expressed in testis and 175 other tissues" ], [ "Q9D517-1", "protein_xref_bgee", "ENSMUSG00000001211", "Expressed in retinal neural layer and 331 other tissues" ], [ "Q9D515-1", "protein_xref_bgee", "ENSMUSG00000067909", "Expressed in spermatid and 8 other tissues" ], [ "Q9D513-1", "protein_xref_bgee", "ENSMUSG00000024155", "Expressed in testis and 77 other tissues" ], [ "Q9D8K8-1", "protein_xref_bgee", "ENSMUSG00000018677", "Expressed in blood and 350 other tissues" ], [ "Q9D518-1", "protein_xref_bgee", "ENSMUSG00000027209", "Expressed in testis and 157 other tissues" ], [ "Q9D519-1", "protein_xref_bgee", "ENSMUSG00000059663", "Expressed in spermatid and 10 other tissues" ], [ "Q61161-1", "protein_xref_bgee", "ENSMUSG00000024948", "Expressed in granulocyte and 267 other tissues" ], [ "Q8K2M0-1", "protein_xref_bgee", "ENSMUSG00000020775", "Expressed in adrenal gland and 308 other tissues" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref Bgee\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T12:36:19.326409\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/mouse_protein_masterlist.csv\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_bgee.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_bgee.csv\n Name: mouse_protein_xref_bgee.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_bgee.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_bgee.csv" }