{
    "bcoid": "GLY_000090",
    "title": "Human UniProtKB Xref Bgee",
    "description": "The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...",
    "filename": "human_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": "Homo sapiens",
        "molecule": "Protein",
        "tags": "Bgee",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P30613-1...",
                "protein_xref..."
            ],
            [
                "Q92994-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P30613-1",
                "protein_xref_bgee",
                "ENSG00000143627",
                "Expressed in liver and 139 other tissues"
            ],
            [
                "Q92994-1",
                "protein_xref_bgee",
                "ENSG00000185024",
                "Expressed in sural nerve and 184 other tissues"
            ],
            [
                "Q9Y2R9-1",
                "protein_xref_bgee",
                "ENSG00000125445",
                "Expressed in muscle of leg and 236 other tissues"
            ],
            [
                "Q92614-1",
                "protein_xref_bgee",
                "ENSG00000196535",
                "Expressed in gastrocnemius and 118 other tissues"
            ],
            [
                "P10242-1",
                "protein_xref_bgee",
                "ENSG00000118513",
                "Expressed in oviduct epithelium and 147 other tissues"
            ],
            [
                "Q9GZW8-1",
                "protein_xref_bgee",
                "ENSG00000166927",
                "Expressed in spleen and 170 other tissues"
            ],
            [
                "O14817-1",
                "protein_xref_bgee",
                "ENSG00000214063",
                "Expressed in stromal cell of endometrium and 231 other tissues"
            ],
            [
                "A2RU30-1",
                "protein_xref_bgee",
                "ENSG00000135426",
                "Expressed in dorsolateral prefrontal cortex and 160 other tissues"
            ],
            [
                "Q6UWY5-1",
                "protein_xref_bgee",
                "ENSG00000183801",
                "Expressed in female gonad and 183 other tissues"
            ],
            [
                "Q6IQ23-1",
                "protein_xref_bgee",
                "ENSG00000166689",
                "Expressed in sural nerve and 176 other tissues"
            ],
            [
                "Q8N6H7-1",
                "protein_xref_bgee",
                "ENSG00000149182",
                "Expressed in stomach and 239 other tissues"
            ],
            [
                "Q96J66-1",
                "protein_xref_bgee",
                "ENSG00000121270",
                "Expressed in sural nerve and 89 other tissues"
            ],
            [
                "Q96J65-1",
                "protein_xref_bgee",
                "ENSG00000140798",
                "Expressed in testis and 59 other tissues"
            ],
            [
                "P25705-1",
                "protein_xref_bgee",
                "ENSG00000152234",
                "Expressed in parietal pleura and 253 other tissues"
            ],
            [
                "Q6UW68-1",
                "protein_xref_bgee",
                "ENSG00000105518",
                "Expressed in right lobe of liver and 212 other tissues"
            ],
            [
                "Q9BUZ4-1",
                "protein_xref_bgee",
                "ENSG00000076604",
                "Expressed in adult mammalian kidney and 221 other tissues"
            ],
            [
                "Q8NC06-1",
                "protein_xref_bgee",
                "ENSG00000181513",
                "Expressed in right lobe of liver and 172 other tissues"
            ],
            [
                "Q8IYT4-1",
                "protein_xref_bgee",
                "ENSG00000167216",
                "Expressed in sural nerve and 143 other tissues"
            ],
            [
                "Q53F39-1",
                "protein_xref_bgee",
                "ENSG00000154889",
                "Expressed in caudate nucleus and 235 other tissues"
            ],
            [
                "A6NC51-1",
                "protein_xref_bgee",
                "ENSG00000180061",
                "Expressed in duodenum and 108 other tissues"
            ],
            [
                "Q13829-1",
                "protein_xref_bgee",
                "ENSG00000109079",
                "Expressed in right lobe of liver and 246 other tissues"
            ],
            [
                "Q8NBW4-1",
                "protein_xref_bgee",
                "ENSG00000177058",
                "Expressed in secondary oocyte and 200 other tissues"
            ],
            [
                "Q14766-1",
                "protein_xref_bgee",
                "ENSG00000049323",
                "Expressed in descending thoracic aorta and 254 other tissues"
            ],
            [
                "P40424-1",
                "protein_xref_bgee",
                "ENSG00000185630",
                "Expressed in endocervix and 249 other tissues"
            ],
            [
                "P40425-1",
                "protein_xref_bgee",
                "ENSG00000204304",
                "Expressed in left lobe of thyroid gland and 233 other tissues"
            ],
            [
                "P40426-1",
                "protein_xref_bgee",
                "ENSG00000167081",
                "Expressed in intestine and 224 other tissues"
            ],
            [
                "P40429-1",
                "protein_xref_bgee",
                "ENSG00000142541",
                "Expressed in left ovary and 113 other tissues"
            ],
            [
                "P62873-1",
                "protein_xref_bgee",
                "ENSG00000078369",
                "Expressed in putamen and 253 other tissues"
            ],
            [
                "Q9Y691-1",
                "protein_xref_bgee",
                "ENSG00000197584",
                "Expressed in islet of Langerhans and 135 other tissues"
            ],
            [
                "Q9H2I8-1",
                "protein_xref_bgee",
                "ENSG00000148655",
                "Expressed in muscle tissue and 188 other tissues"
            ],
            [
                "P13804-1",
                "protein_xref_bgee",
                "ENSG00000140374",
                "Expressed in oocyte and 246 other tissues"
            ],
            [
                "Q5ZPR3-1",
                "protein_xref_bgee",
                "ENSG00000103855",
                "Expressed in stromal cell of endometrium and 201 other tissues"
            ],
            [
                "Q9NQU5-1",
                "protein_xref_bgee",
                "ENSG00000137843",
                "Expressed in prefrontal cortex and 119 other tissues"
            ],
            [
                "H0YL14-1",
                "protein_xref_bgee",
                "ENSG00000238227",
                "Expressed in stomach and 197 other tissues"
            ],
            [
                "P29692-1",
                "protein_xref_bgee",
                "ENSG00000104529",
                "Expressed in tendon of biceps brachii and 247 other tissues"
            ],
            [
                "Q9GZS3-1",
                "protein_xref_bgee",
                "ENSG00000140395",
                "Expressed in pituitary gland and 241 other tissues"
            ],
            [
                "Q96R06-1",
                "protein_xref_bgee",
                "ENSG00000076382",
                "Expressed in testis and 167 other tissues"
            ],
            [
                "Q96L93-1",
                "protein_xref_bgee",
                "ENSG00000089177",
                "Expressed in sural nerve and 221 other tissues"
            ],
            [
                "Q969W1-1",
                "protein_xref_bgee",
                "ENSG00000171307",
                "Expressed in parotid gland and 213 other tissues"
            ],
            [
                "Q13228-1",
                "protein_xref_bgee",
                "ENSG00000143416",
                "Expressed in mucosa of transverse colon and 236 other tissues"
            ],
            [
                "P02741-1",
                "protein_xref_bgee",
                "ENSG00000132693",
                "Expressed in right lobe of liver and 95 other tissues"
            ],
            [
                "P29353-1",
                "protein_xref_bgee",
                "ENSG00000160691",
                "Expressed in left coronary artery and 246 other tissues"
            ],
            [
                "Q5VVP1-1",
                "protein_xref_bgee",
                "ENSG00000185775",
                "Expressed in right testis and 9 other tissues"
            ],
            [
                "Q8N865-1",
                "protein_xref_bgee",
                "ENSG00000153790",
                "Expressed in sperm and 166 other tissues"
            ],
            [
                "Q9Y547-1",
                "protein_xref_bgee",
                "ENSG00000081870",
                "Expressed in oocyte and 246 other tissues"
            ],
            [
                "A6NIR3-1",
                "protein_xref_bgee",
                "ENSG00000172650",
                "Expressed in body of pancreas and 113 other tissues"
            ],
            [
                "Q8N720-1",
                "protein_xref_bgee",
                "ENSG00000197343",
                "Expressed in placenta and 216 other tissues"
            ],
            [
                "Q86VY4-1",
                "protein_xref_bgee",
                "ENSG00000180543",
                "Expressed in testis and 247 other tissues"
            ],
            [
                "Q86VY9-1",
                "protein_xref_bgee",
                "ENSG00000164484",
                "Expressed in secondary oocyte and 172 other tissues"
            ],
            [
                "Q9Y5S9-1",
                "protein_xref_bgee",
                "ENSG00000265241",
                "Expressed in subventricular zone (outer) (primate) and 244 other tissues"
            ],
            [
                "O60733-1",
                "protein_xref_bgee",
                "ENSG00000184381",
                "Expressed in right uterine tube and 203 other tissues"
            ],
            [
                "P19075-1",
                "protein_xref_bgee",
                "ENSG00000127324",
                "Expressed in sigmoid colon and 210 other tissues"
            ],
            [
                "Q96QE4-1",
                "protein_xref_bgee",
                "ENSG00000185158",
                "Expressed in cortical plate and 115 other tissues"
            ],
            [
                "Q9P0K1-1",
                "protein_xref_bgee",
                "ENSG00000008277",
                "Expressed in cerebellum and 190 other tissues"
            ],
            [
                "Q99519-1",
                "protein_xref_bgee",
                "ENSG00000204386",
                "Expressed in islet of Langerhans and 232 other tissues"
            ],
            [
                "O15417-1",
                "protein_xref_bgee",
                "ENSG00000182095",
                "Expressed in nasal cavity epithelium and 212 other tissues"
            ],
            [
                "Q96RU7-1",
                "protein_xref_bgee",
                "ENSG00000101255",
                "Expressed in liver and 174 other tissues"
            ],
            [
                "O75448-1",
                "protein_xref_bgee",
                "ENSG00000008838",
                "Expressed in pituitary gland and 213 other tissues"
            ],
            [
                "Q96RU3-1",
                "protein_xref_bgee",
                "ENSG00000187239",
                "Expressed in corpus callosum and 248 other tissues"
            ],
            [
                "Q96RU2-1",
                "protein_xref_bgee",
                "ENSG00000048028",
                "Expressed in heart and 209 other tissues"
            ],
            [
                "Q96RU8-1",
                "protein_xref_bgee",
                "ENSG00000173334",
                "Expressed in thyroid gland and 236 other tissues"
            ],
            [
                "Q96IK0-1",
                "protein_xref_bgee",
                "ENSG00000091947",
                "Expressed in vagina and 200 other tissues"
            ],
            [
                "Q7Z7G2-1",
                "protein_xref_bgee",
                "ENSG00000166569",
                "Expressed in cerebellar hemisphere and 12 other tissues"
            ],
            [
                "Q9H9Q4-1",
                "protein_xref_bgee",
                "ENSG00000187736",
                "Expressed in rectum and 118 other tissues"
            ],
            [
                "Q6ZRV2-1",
                "protein_xref_bgee",
                "ENSG00000180921",
                "Expressed in vagina and 173 other tissues"
            ],
            [
                "Q5VYV7-1",
                "protein_xref_bgee",
                "ENSG00000149346",
                "Expressed in metanephros and 209 other tissues"
            ],
            [
                "Q8N6T0-1",
                "protein_xref_bgee",
                "ENSG00000173715",
                "Expressed in skin of abdomen and 144 other tissues"
            ],
            [
                "Q9UGK8-1",
                "protein_xref_bgee",
                "ENSG00000129158",
                "Expressed in substantia nigra and 213 other tissues"
            ],
            [
                "Q8NCR3-1",
                "protein_xref_bgee",
                "ENSG00000166323",
                "Expressed in testis and 115 other tissues"
            ],
            [
                "Q9UHL0-1",
                "protein_xref_bgee",
                "ENSG00000109832",
                "Expressed in testis and 147 other tissues"
            ],
            [
                "Q9UIF3-1",
                "protein_xref_bgee",
                "ENSG00000092850",
                "Expressed in right uterine tube and 101 other tissues"
            ],
            [
                "Q8N7N1-1",
                "protein_xref_bgee",
                "ENSG00000186523",
                "Expressed in right uterine tube and 114 other tissues"
            ],
            [
                "Q9H3V2-1",
                "protein_xref_bgee",
                "ENSG00000166930",
                "Expressed in sperm and 69 other tissues"
            ],
            [
                "Q9NQ36-1",
                "protein_xref_bgee",
                "ENSG00000175356",
                "Expressed in fundus of stomach and 185 other tissues"
            ],
            [
                "P16520-1",
                "protein_xref_bgee",
                "ENSG00000111664",
                "Expressed in pituitary gland and 165 other tissues"
            ],
            [
                "Q8NCJ5-1",
                "protein_xref_bgee",
                "ENSG00000167778",
                "Expressed in anterior cingulate cortex and 215 other tissues"
            ],
            [
                "Q9Y296-1",
                "protein_xref_bgee",
                "ENSG00000196655",
                "Expressed in right testis and 237 other tissues"
            ],
            [
                "Q9Y297-1",
                "protein_xref_bgee",
                "ENSG00000166167",
                "Expressed in frontal cortex and 226 other tissues"
            ],
            [
                "Q9Y294-1",
                "protein_xref_bgee",
                "ENSG00000111875",
                "Expressed in oocyte and 241 other tissues"
            ],
            [
                "Q9Y295-1",
                "protein_xref_bgee",
                "ENSG00000185721",
                "Expressed in testis and 246 other tissues"
            ],
            [
                "Q99613-1",
                "protein_xref_bgee",
                "ENSG00000184110",
                "Expressed in right testis and 186 other tissues"
            ],
            [
                "P17027-1",
                "protein_xref_bgee",
                "ENSG00000167377",
                "Expressed in cortical plate and 114 other tissues"
            ],
            [
                "P35637-1",
                "protein_xref_bgee",
                "ENSG00000089280",
                "Expressed in right testis and 250 other tissues"
            ],
            [
                "Q9UL33-1",
                "protein_xref_bgee",
                "ENSG00000167515",
                "Expressed in right adrenal gland and 234 other tissues"
            ]
        ]
    },
    "readme": "Name\n   - Human UniProtKB Xref Bgee\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2019-01-23T17:21:05.959744\n\nModified on\n   - 2020-04-10T11:31:45.477452\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n   - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-homo-sapiens.nt\n      URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n      Name: human_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n   Output Subdomain\n      Name: human_protein_xref_bgee.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.csv\n      Name: human_protein_xref_bgee.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_bgee.csv"
}