{
    "bcoid": "GLY_000617",
    "title": "Human Cancer Mutation Loss of Glycosylation",
    "description": "",
    "filename": "human_protein_mutation_cancer_glycosylation_loss.csv",
    "filetype": "csv",
    "categories": {
        "species": "Homo sapiens",
        "molecule": "Protein",
        "tags": "Cancer Mutations Loss of Glycosylation",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q9Y287-1...",
                "172..."
            ],
            [
                "Q9Y287-1...",
                "172..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "mut_pos..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "mut_pos"
                },
                {
                    "type": "string",
                    "label": "mut_ref_aa"
                },
                {
                    "type": "string",
                    "label": "mut_alt_aa"
                },
                {
                    "type": "string",
                    "label": "ref_motif"
                },
                {
                    "type": "string",
                    "label": "alt_motif"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "do_name"
                },
                {
                    "type": "string",
                    "label": "mut_flags_score"
                },
                {
                    "type": "string",
                    "label": "mut_flags"
                },
                {
                    "type": "string",
                    "label": "mut_source"
                },
                {
                    "type": "string",
                    "label": "gly_pos"
                },
                {
                    "type": "string",
                    "label": "gly_ref_aa"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "gly_xref_key"
                },
                {
                    "type": "string",
                    "label": "gly_xref_id"
                },
                {
                    "type": "string",
                    "label": "gly_flags_score"
                },
                {
                    "type": "string",
                    "label": "gly_source"
                }
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NHS->NHA).",
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                "N",
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                "K",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NHS->KHS).",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NFT->NFI).",
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                "N",
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            ],
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                "DOID:4159 / skin cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGS->NGF).",
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                "N",
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                "uniprotkb"
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                "T",
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "uniprotkb"
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
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                "N",
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                "uniprotkb"
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            [
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                "263",
                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
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                "N",
                "G75983OB",
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                "glyconnect"
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            [
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
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                "glyconnect"
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "N",
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                "literature"
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
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                "N",
                "",
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                "literature"
            ],
            [
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
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                "literature"
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                "DOID:263 / kidney cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NET->NEA).",
                "biomuta",
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                "",
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                "literature"
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                "S",
                "P",
                "NTS",
                "NTP",
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                "DOID:10534 / stomach cancer",
                "passed",
                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NTS->NTP).",
                "biomuta",
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                "N",
                "",
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                "0",
                "uniprotkb"
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                "DOID:4362 / cervical cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NQS->NQF).",
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                "",
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                "uniprotkb"
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NQS->NQF).",
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                "uniprotkb"
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                "DOID:1324 / lung cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NNS->KNS).",
                "biomuta",
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                "N",
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                "uniprotkb"
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NSS->NSG).",
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                "uniprotkb"
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                "DOID:363 / uterine cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NIS->SIS).",
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            [
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                "T",
                "I",
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                "DOID:363 / uterine cancer",
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                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NKT->NKI).",
                "biomuta",
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                "N",
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                "uniprotkb"
            ],
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                "T",
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                "Y",
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                "Q8NGG6",
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                "A",
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                "N",
                "",
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            [
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                "DOID:363 / uterine cancer",
                "passed",
                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NRT->NRM).",
                "biomuta",
                "91",
                "N",
                "G15169WU",
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                "1087",
                "1",
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        ]
    },
    "readme": "Name\n   - Human Cancer Mutation Loss of Glycosylation\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2021-10-15T15:32:16.971706\n\nModified on\n   - 2021-10-15T15:33:35.792488\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n\nI/O Domain\n   Output Subdomain\n      Name: human_protein_mutation_cancer_glycosylation_loss.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv\n      Name: human_protein_mutation_cancer_glycosylation_loss.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv"
}
