{
    "bcoid": "GLY_000599",
    "title": "Rat UniProtKB Xref Rhea",
    "description": "The Rat UniProtKB Xref Rhea contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...",
    "filename": "rat_protein_xref_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Rhea cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q5RJZ1-1...",
                "protein_xref..."
            ],
            [
                "Q0HA29-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q5RJZ1-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "Q0HA29-1",
                "protein_xref_rhea",
                "21360",
                "ATP + beta-nicotinamide D-ribonucleotide + H(+) = diphosphate + NAD(+)"
            ],
            [
                "Q0HA29-1",
                "protein_xref_rhea",
                "22860",
                "ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "33655",
                "(9Z)-octadecenoate(out) = (9Z)-octadecenoate(in)"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "45256",
                "hexadecanoate(out) = hexadecanoate(in)"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "45252",
                "tetradecanoate(out) = tetradecanoate(in)"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "45260",
                "tetracosanoate(out) = tetracosanoate(in)"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "45264",
                "(9Z,12Z)-octadecadienoate(out) = (9Z,12Z)-octadecadienoate(in)"
            ],
            [
                "Q07969-1",
                "protein_xref_rhea",
                "45248",
                "butanoate(out) = butanoate(in)"
            ],
            [
                "Q9QYG8-1",
                "protein_xref_rhea",
                "24674",
                "ATP + cytidine = ADP + CMP + H(+)"
            ],
            [
                "Q9QYG8-1",
                "protein_xref_rhea",
                "16825",
                "ATP + uridine = ADP + H(+) + UMP"
            ],
            [
                "A0A0G2KA92-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "P21932-1",
                "protein_xref_rhea",
                "15389",
                "ATP = 3',5'-cyclic AMP + diphosphate"
            ],
            [
                "G3V6I4-1",
                "protein_xref_rhea",
                "61644",
                "2 [Fe(II)-cytochrome b5] + 2 H(+) + N(omega)-hydroxy-L-arginine = 2 [Fe(III)-cytochrome b5] + H2O + L-arginine"
            ],
            [
                "P11980-1",
                "protein_xref_rhea",
                "18157",
                "ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate"
            ],
            [
                "M0RB75-1",
                "protein_xref_rhea",
                "60200",
                "2 2-oxoglutarate + N(6),N(6),N(6)-trimethyl-L-lysyl(9)-[histone H3] + 2 O2 = 2 CO2 + 2 formaldehyde + N(6)-methyl-L-lysyl(9)-[histone H3] + 2 succinate"
            ],
            [
                "P56558-1",
                "protein_xref_rhea",
                "48908",
                "L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-(N-acetyl-beta-D-glucosaminyl)-L-threonyl-[protein] + H(+) + UDP"
            ],
            [
                "P08011-1",
                "protein_xref_rhea",
                "16437",
                "glutathione + RX = a halide anion + an S-substituted glutathione + H(+)"
            ],
            [
                "P54690-1",
                "protein_xref_rhea",
                "24801",
                "2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoate + L-glutamate"
            ],
            [
                "P54690-1",
                "protein_xref_rhea",
                "18321",
                "2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate"
            ],
            [
                "P54690-1",
                "protein_xref_rhea",
                "24813",
                "2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate"
            ],
            [
                "Q02293-1",
                "protein_xref_rhea",
                "13345",
                "(2E,6E)-farnesyl diphosphate + L-cysteinyl-[protein] = diphosphate + S-(2E,6E)-farnesyl-L-cysteinyl-[protein]"
            ],
            [
                "D3ZFP4-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "D4A133-1",
                "protein_xref_rhea",
                "57720",
                "ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate"
            ],
            [
                "P09875-1",
                "protein_xref_rhea",
                "21032",
                "glucuronate acceptor + UDP-alpha-D-glucuronate = acceptor beta-D-glucuronoside + H(+) + UDP"
            ],
            [
                "D3ZCS9-1",
                "protein_xref_rhea",
                "23736",
                "5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+)"
            ],
            [
                "O88664-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "O88664-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "P00176-1",
                "protein_xref_rhea",
                "17149",
                "an organic molecule + O2 + reduced [NADPH--hemoprotein reductase] = an alcohol + H(+) + H2O + oxidized [NADPH--hemoprotein reductase]"
            ],
            [
                "F1LP13-1",
                "protein_xref_rhea",
                "10684",
                "H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate"
            ],
            [
                "F1LY04-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "F1LY04-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "Q5BJS0-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "E9PTF0-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "Q00972-1",
                "protein_xref_rhea",
                "17301",
                "ATP + L-seryl-[3-methyl-2-oxobutanoate dehydrogenase] = ADP + H(+) + O-phospho-L-seryl-[3-methyl-2-oxobutanoate dehydrogenase]"
            ],
            [
                "O35790-1",
                "protein_xref_rhea",
                "11660",
                "a 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + H2O = a 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + acetate"
            ],
            [
                "O70276-1",
                "protein_xref_rhea",
                "12729",
                "lutein = (3R,3'S)-zeaxanthin"
            ],
            [
                "O70276-1",
                "protein_xref_rhea",
                "31771",
                "an all-trans-retinyl ester + H2O = 11-cis-retinol + a fatty acid + H(+)"
            ],
            [
                "O70276-1",
                "protein_xref_rhea",
                "31775",
                "all-trans-retinyl hexadecanoate + H2O = 11-cis-retinol + H(+) + hexadecanoate"
            ],
            [
                "D3ZH30-1",
                "protein_xref_rhea",
                "11008",
                "a 5'-end triphospho-(purine-ribonucleoside) in mRNA + H2O = a 5'-end diphospho-(purine-ribonucleoside) in mRNA + H(+) + phosphate"
            ],
            [
                "D3ZH30-1",
                "protein_xref_rhea",
                "67012",
                "a 5'-end diphospho-ribonucleoside in mRNA + GTP + H(+) = a 5'-end (5'-triphosphoguanosine)-(ribonucleoside) in mRNA + diphosphate"
            ],
            [
                "Q5BK35-1",
                "protein_xref_rhea",
                "15801",
                "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)"
            ],
            [
                "Q505J8-1",
                "protein_xref_rhea",
                "19413",
                "ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)"
            ],
            [
                "E9PSY0-1",
                "protein_xref_rhea",
                "10596",
                "ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]"
            ],
            [
                "A0A0G2K2H4-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "A0A0G2K2H4-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "A0A0G2K2H5-1",
                "protein_xref_rhea",
                "14729",
                "beta-D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + dihydroxyacetone phosphate"
            ],
            [
                "Q9ERD9-1",
                "protein_xref_rhea",
                "14189",
                "D-tryptophan + O2 = N-formyl-D-kynurenine"
            ],
            [
                "Q9ERD9-1",
                "protein_xref_rhea",
                "24536",
                "L-tryptophan + O2 = N-formyl-L-kynurenine"
            ],
            [
                "P09216-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "P09216-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "M0R4N8-1",
                "protein_xref_rhea",
                "10596",
                "ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]"
            ],
            [
                "Q812E8-1",
                "protein_xref_rhea",
                "24384",
                "ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)"
            ],
            [
                "Q63285-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q63285-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "30751",
                "ATP + CoA + hexadecanoate = AMP + diphosphate + hexadecanoyl-CoA"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "19713",
                "(5Z,8Z,11Z,14Z)-eicosatetraenoate + ATP + CoA = (5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoA + AMP + diphosphate"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "33639",
                "ATP + CoA + tetracosanoate = AMP + diphosphate + tetracosanoyl-CoA"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "33651",
                "(9Z,12Z)-octadecadienoate + ATP + CoA = (9Z,12Z)-octadecadienoyl-CoA + AMP + diphosphate"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "33607",
                "(9Z)-octadecenoate + ATP + CoA = (9Z)-octadecenoyl-CoA + AMP + diphosphate"
            ],
            [
                "A1L1K7-1",
                "protein_xref_rhea",
                "15421",
                "a long-chain fatty acid + ATP + CoA = a long-chain fatty acyl-CoA + AMP + diphosphate"
            ],
            [
                "P40329-1",
                "protein_xref_rhea",
                "20301",
                "ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)"
            ],
            [
                "D3ZQT7-1",
                "protein_xref_rhea",
                "52636",
                "2-oxoglutarate + a 5-methyl-2'-deoxycytidine in DNA + O2 = a 5-hydroxymethyl-2'-deoxycytidine in DNA + CO2 + succinate"
            ],
            [
                "D3ZQT0-1",
                "protein_xref_rhea",
                "66684",
                "L-cysteinyl-[protein] + S-nitroso-L-cysteinyl-[GAPDH] = L-cysteinyl-[GAPDH] + S-nitroso-L-cysteinyl-[protein]"
            ],
            [
                "D3ZQT0-1",
                "protein_xref_rhea",
                "10300",
                "D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = (2R)-3-phospho-glyceroyl phosphate + H(+) + NADH"
            ],
            [
                "Q9Z1Z1-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q9Z1Z1-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "Q9Z1Z6-1",
                "protein_xref_rhea",
                "20629",
                "H2O + O-phospho-L-seryl-[protein] = L-seryl-[protein] + phosphate"
            ],
            [
                "Q9Z1Z6-1",
                "protein_xref_rhea",
                "47004",
                "H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate"
            ],
            [
                "B5DFK7-1",
                "protein_xref_rhea",
                "19233",
                "H2O + S-hexadecanoyl-L-cysteinyl-[protein] = H(+) + hexadecanoate + L-cysteinyl-[protein]"
            ],
            [
                "Q68FX1-1",
                "protein_xref_rhea",
                "12356",
                "D-mannose 6-phosphate = D-fructose 6-phosphate"
            ],
            [
                "Q68FX9-1",
                "protein_xref_rhea",
                "47672",
                "H2O + N(6)-malonyl-L-lysyl-[protein] + NAD(+) = 2''-O-malonyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide"
            ],
            [
                "Q68FX9-1",
                "protein_xref_rhea",
                "47664",
                "H2O + N(6)-glutaryl-L-lysyl-[protein] + NAD(+) = 2''-O-glutaryl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide"
            ],
            [
                "Q68FX9-1",
                "protein_xref_rhea",
                "47668",
                "H2O + N(6)-succinyl-L-lysyl-[protein] + NAD(+) = 2''-O-succinyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide"
            ],
            [
                "Q99JE6-1",
                "protein_xref_rhea",
                "33179",
                "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + H2O = 1D-myo-inositol 1,4,5-trisphosphate + a 1,2-diacyl-sn-glycerol + H(+)"
            ],
            [
                "Q99JE6-1",
                "protein_xref_rhea",
                "43484",
                "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + H2O = 1D-myo-inositol 1-phosphate + a 1,2-diacyl-sn-glycerol + H(+)"
            ],
            [
                "D3Z980-1",
                "protein_xref_rhea",
                "67024",
                "a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleoside)-(ribonucleotide) in mRNA + S-adenosyl-L-methionine = a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-(2'-O-methyl-ribonucleoside)-(2'-O-methyl-ribonucleotide) in mRNA + H(+) + S-adenosyl-L-homocysteine"
            ],
            [
                "Q63009-1",
                "protein_xref_rhea",
                "48096",
                "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = 2 H(+) + N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine"
            ],
            [
                "Q91ZN7-1",
                "protein_xref_rhea",
                "22980",
                "a dolichyl diphosphooligosaccharide + L-asparaginyl-[protein] = dolichyl diphosphate + H(+) + N(4)-(oligosaccharide-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl)-L-asparaginy-[protein]"
            ],
            [
                "B2GUY1-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "B2GUY1-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q8CHM7-1",
                "protein_xref_rhea",
                "25379",
                "2-hydroxy-3-methylhexadecanoyl-CoA = 2-methylpentadecanal + formyl-CoA"
            ],
            [
                "Q8CHM7-1",
                "protein_xref_rhea",
                "55196",
                "2-hydroxyoctadecanoyl-CoA = formyl-CoA + heptadecanal"
            ],
            [
                "Q8CHM7-1",
                "protein_xref_rhea",
                "25355",
                "2-hydroxyphytanoyl-CoA = 2,6,10,14-tetramethylpentadecanal + formyl-CoA"
            ]
        ]
    },
    "readme": "Name\n   - Rat UniProtKB Xref Rhea\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2021-10-15T06:39:59.122715\n\nModified on\n   - \n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat UniProtKB Xref Rhea contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to Rhea database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - Rhea\n\nDescription Domain\n   Keywords\n   - reactions\n   - Rhea\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Rhea database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_xref_rhea.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_rhea.csv\n      Name: rat_protein_xref_rhea.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_rhea.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_rhea.csv"
}