{ "bcoid": "GLY_000573", "title": "Mouse Proteoform Citations (Literature Mining)", "description": "The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. ...", "filename": "mouse_proteoform_citations_glycosylation_literature_mining.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O55188-1...", "Glycosylatio..." ], [ "P10761-1...", "Inactivation..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "O55188-1", "Glycosylation of dentin matrix protein 1 is a novel key element for astrocyte maturation and BBB integrity.", "Protein & cell", "2018 Mar", "Jing B, Zhang C, Liu X, Zhou L, Liu J, Yao Y, Yu J, Weng Y, Pan M, Liu J, Wang Z, Sun Y, Sun YE", "protein_xref_pubmed", "28822114", "protein_xref_automatic_literature_mining", "28822114", "" ], [ "P10761-1", "Inactivation of the mouse sperm receptor, mZP3, by site-directed mutagenesis of individual serine residues located at the combining site for sperm.", "Proceedings of the National Academy of Sciences of the United States of America", "1998 May 26", "Chen J, Litscher ES, Wassarman PM", "protein_xref_pubmed", "9600940", "protein_xref_automatic_literature_mining", "9600940", "" ], [ "P56818-1", "Bisecting GlcNAc modification stabilizes BACE1 protein under oxidative stress conditions.", "The Biochemical journal", "2016 Jan 1", "Kizuka Y, Nakano M, Kitazume S, Saito T, Saido TC, Taniguchi N", "protein_xref_pubmed", "26467158", "protein_xref_automatic_literature_mining", "26467158", "" ], [ "Q04519-1", "Functional analysis of the glycosylation of murine acid sphingomyelinase.", "The Journal of biological chemistry", "1996 Dec 13", "Newrzella D, Stoffel W", "protein_xref_pubmed", "8943261", "protein_xref_automatic_literature_mining", "8943261", "" ], [ "Q05769-1", "N-glycosylation of prostaglandin endoperoxide synthases-1 and -2 and their orientations in the endoplasmic reticulum.", "The Journal of biological chemistry", "1993 Aug 25", "Otto JC, DeWitt DL, Smith WL", "protein_xref_pubmed", "8349699", "protein_xref_automatic_literature_mining", "8349699", "" ], [ "Q3TYD4-1", "Molecular characterization of arylsulfatase G: expression, processing, glycosylation, transport, and activity.", "The Journal of biological chemistry", "2014 Oct 3", "Kowalewski B, Lubke T, Kollmann K, Braulke T, Reinheckel T, Dierks T, Damme M", "protein_xref_pubmed", "25135642", "protein_xref_automatic_literature_mining", "25135642", "" ], [ "Q60625-1", "Asn54-linked glycan is critical for functional folding of intercellular adhesion molecule-5.", "Glycoconjugate journal", "2012 Jan", "Ohgomori T, Nanao T, Morita A, Ikekita M", "protein_xref_pubmed", "22187327", "protein_xref_automatic_literature_mining", "22187327", "" ], [ "Q9D1N2-1", "Glycosylation of Asn-76 in mouse GPIHBP1 is critical for its appearance on the cell surface and the binding of chylomicrons and lipoprotein lipase.", "Journal of lipid research", "2008 Jun", "Beigneux AP, Gin P, Davies BS, Weinstein MM, Bensadoun A, Ryan RO, Fong LG, Young SG", "protein_xref_pubmed", "18340083", "protein_xref_automatic_literature_mining", "18340083", "" ], [ "Q9D806-1", "Differential effects of N-linked glycosylation of Vstm5 at multiple sites on surface expression and filopodia formation.", "PloS one", "2017", "Lee AR, Kim S, Ko KW, Park CS", "protein_xref_pubmed", "28746350", "protein_xref_automatic_literature_mining", "28746350", "" ], [ "Q9EQN9-1", "Slc19a2: cloning and characterization of the murine thiamin transporter cDNA and genomic sequence, the orthologue of the human TRMA gene.", "Molecular genetics and metabolism", "2001 Jun", "Oishi K, Hirai T, Gelb BD, Diaz GA", "protein_xref_pubmed", "11386850", "protein_xref_automatic_literature_mining", "11386850", "" ], [ "Q9JIP7-1", "Glycans in the intestinal peptide transporter PEPT1 contribute to function and protect from proteolysis.", "American journal of physiology. Gastrointestinal and liver physiology", "2017 Jun 1", "Stelzl T, Geillinger-Kastle KE, Stolz J, Daniel H", "protein_xref_pubmed", "28336547", "protein_xref_automatic_literature_mining", "28336547", "" ], [ "Q9WVL3-1", "Glycosylation regulates the function and membrane localization of KCC4.", "Biochimica et biophysica acta", "2013 May", "Weng TY, Chiu WT, Liu HS, Cheng HC, Shen MR, Mount DB, Chou CY", "protein_xref_pubmed", "23376777", "protein_xref_automatic_literature_mining", "23376777", "" ] ] }, "readme": "Name\n - Mouse Proteoform Citations (Literature Mining)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2021-06-04T10:20:39.827303\n\nModified on\n - 2021-06-04T10:23:05.815463\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - Literature\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_literature_mining.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/mouse_proteoform_glycosylation_sites_literature_mining.csv\n Output Subdomain\n Name: mouse_proteoform_citations_glycosylation_literature_mining.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_proteoform_citations_glycosylation_literature_mining.csv\n Name: mouse_proteoform_citations_glycosylation_literature_mining.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_proteoform_citations_glycosylation_literature_mining.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_proteoform_citations_glycosylation_literature_mining.csv" }