{
    "bcoid": "GLY_000535",
    "title": "SARS-CoV2 Proteoform Citations (GlyConnect)",
    "description": "The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the ...",
    "filename": "sarscov2_proteoform_citations_glycosylation_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Proteoform",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
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                "Site-specific glycan analysis of the SARS-CoV-2 spike.",
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            ],
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                "P0DTC2-1",
                "Site-specific glycan analysis of the SARS-CoV-2 spike.",
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                "2020 May 4",
                "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M",
                "protein_xref_pubmed",
                "32366695",
                "protein_xref_glyconnect",
                "2840",
                "G64394MX"
            ],
            [
                "P0DTC2-1",
                "Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2.",
                "Glycobiology",
                "2020 May 4",
                "Shajahan A, Supekar NT, Gleinich AS, Azadi P",
                "protein_xref_pubmed",
                "32363391",
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                "G60145BJ"
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    },
    "readme": "Name\n   - SARS-CoV2 Proteoform Citations (GlyConnect)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-12-11T14:19:01.972822\n\nModified on\n   - 2020-12-11T14:24:00.759472\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000530. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: sarscov2_proteoform_citations_glycosylation_glyconnect.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_proteoform_citations_glycosylation_glyconnect.csv\n      Name: sarscov2_proteoform_citations_glyconnect.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_proteoform_citations_glyconnect.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_proteoform_citations_glycosylation_glyconnect.csv"
}