{ "bcoid": "GLY_000514", "title": "Human Proteoform Citations (Tyr O-linked)", "description": "The dataset provides citation details corresponding to the PubMed ID (PMID) from file human_proteoform_glycosylation_sites_tyr_o_linked.csv. ...", "filename": "human_proteoform_citations_glycosylation_tyr_o_linked.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations (Tyr O-linked)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O14672-1...", "Precision ma..." ], [ "P35318-1...", "Probing the ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "O14672-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P35318-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P35318-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P05067-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "O75752-1", "Precision mapping of the human O-GalNAc 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Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q76M96-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q76M96-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P16070-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P16070-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P16070-1", "Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Vakhrushev SY, Steentoft C, Vester-Christensen MB, Bennett EP, Clausen H, Levery SB", "protein_xref_pubmed", "23399548", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P32970-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P32970-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P29279-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "O94907-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "O94907-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q16610-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q16610-1", "Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.", "Molecular & cellular proteomics 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"protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q96DB9-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q99988-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P06865-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P06865-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P98160-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P28300-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P28300-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q86X29-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q86X29-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q9NS15-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q9UKM7-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q9H8J5-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P14543-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P14543-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P42857-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P42857-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q02818-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q02818-1", "Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Vakhrushev SY, Steentoft C, Vester-Christensen MB, Bennett EP, Clausen H, Levery SB", "protein_xref_pubmed", "23399548", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q02818-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P80303-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P80303-1", "Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Vakhrushev SY, Steentoft C, Vester-Christensen MB, Bennett EP, Clausen H, Levery SB", "protein_xref_pubmed", "23399548", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P80303-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "O60568-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q96NZ9-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q96NZ9-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q96NZ9-1", "Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Vakhrushev SY, Steentoft C, Vester-Christensen MB, Bennett EP, Clausen H, Levery SB", "protein_xref_pubmed", "23399548", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q9BRK5-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q9BRK5-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q08629-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "Q08629-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "O95793-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P13611-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_glygen_ds", "GLYDS000268", "" ], [ "P13611-1", "Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.", "The EMBO journal", "2013 May 15", "Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H", "protein_xref_pubmed", "23584533", "protein_xref_glygen_ds", "GLYDS000268", "" ] ] }, "readme": "Name\n - Human Proteoform Citations (Tyr O-linked)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-06-26T15:25:42.130665\n\nModified on\n - 2021-06-04T09:49:43.684153\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citation details corresponding to the PubMed ID (PMID) from file human_proteoform_glycosylation_sites_tyr_o_linked.csv. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - Literature\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_citations_tyr_o_linked.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/human_proteoform_citations_glycosylation_tyr_o_linked.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_tyr_o_linked.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_citations_glycosylation_tyr_o_linked.csv\n Name: human_proteoform_citations_glycosylation_tyr_o_linked.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_citations_glycosylation_tyr_o_linked.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_proteoform_citations_glycosylation_tyr_o_linked.csv" }