{
    "bcoid": "GLY_000490",
    "title": "SARS-CoV2 Protein Diseases",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Diseases dataset contains disease caused by sarscov2 ...",
    "filename": "sarscov2_protein_disease_glygen.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "diseases",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "protein_xref..."
            ],
            [
                "P0DTD1-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "mondo_id"
                },
                {
                    "type": "string",
                    "label": "mim_id"
                }
            ],
            [
                "P0DTD2-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTD1-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "A0A663DJA2-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTD3-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC7-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC6-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC5-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC4-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC3-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC2-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC1-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTD8-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC9-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ],
            [
                "P0DTC8-1",
                "protein_xref_glygen_ds",
                "GLYDS000490",
                "80600",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Diseases\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-04-29T16:16:01.099167\n\nModified on\n   - 2020-04-29T21:47:59.417091\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Diseases dataset contains disease caused by sarscov2 virus [taxid:2697049] which is COVID-19 mapped to all UniProtKB canonical accessions. The dataset contains COVID-19 disease ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - COVID-19\n   - DOID\n   - SARS-CoV-2\n   - disease\n\n   Pipeline Steps\n   - Step-1: The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_disease.csv\n      URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/compiled/sarscov2_protein_disease.csv\n   Output Subdomain\n      Name: sarscov2_protein_disease_glygen.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_protein_disease_glygen.csv\n      Name: sarscov2_protein_disease.stat.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_protein_disease.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/sarscov2_protein_disease_glygen.csv"
}