{
    "bcoid": "GLY_000485",
    "title": "Rat Proteoform Citations (GlyConnect)",
    "description": "The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
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                "European journal of biochemistry",
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                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
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                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
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                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
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            [
                "Q62635-1",
                "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.",
                "The Journal of biological chemistry",
                "1997 Oct 24",
                "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC",
                "protein_xref_pubmed",
                "9341141",
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                "380",
                "G88908BO"
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            [
                "P02764-1",
                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
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                "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A",
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                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
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                "18",
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            [
                "Q62635-1",
                "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.",
                "The Journal of biological chemistry",
                "1993 Sep 5",
                "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC",
                "protein_xref_pubmed",
                "8360170",
                "protein_xref_glyconnect",
                "380",
                "G12678YV"
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            [
                "Q62635-1",
                "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.",
                "The Journal of biological chemistry",
                "1997 Oct 24",
                "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC",
                "protein_xref_pubmed",
                "9341141",
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                "380",
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            [
                "Q62635-1",
                "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.",
                "The Journal of biological chemistry",
                "1997 Oct 24",
                "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC",
                "protein_xref_pubmed",
                "9341141",
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            [
                "Q62765-1",
                "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.",
                "Biochemistry",
                "2004 Feb 17",
                "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P",
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            [
                "Q62765-1",
                "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.",
                "Biochemistry",
                "2004 Feb 17",
                "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P",
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                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
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                "The Journal of biological chemistry",
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                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
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            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
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            [
                "Q62765-1",
                "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.",
                "Biochemistry",
                "2004 Feb 17",
                "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P",
                "protein_xref_pubmed",
                "14769026",
                "protein_xref_glyconnect",
                "433",
                "G47992RQ"
            ],
            [
                "Q62765-1",
                "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.",
                "Biochemistry",
                "2004 Feb 17",
                "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P",
                "protein_xref_pubmed",
                "14769026",
                "protein_xref_glyconnect",
                "433",
                "G64394MX"
            ],
            [
                "P02764-1",
                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
                "1981 Aug 25",
                "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A",
                "protein_xref_pubmed",
                "7263664",
                "protein_xref_glyconnect",
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            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G45359RY"
            ],
            [
                "P98158-1",
                "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.",
                "Glycobiology",
                "2000 Mar",
                "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A",
                "protein_xref_pubmed",
                "10704528",
                "protein_xref_glyconnect",
                "344",
                "G31747RS"
            ],
            [
                "P98158-1",
                "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.",
                "Glycobiology",
                "2000 Mar",
                "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A",
                "protein_xref_pubmed",
                "10704528",
                "protein_xref_glyconnect",
                "344",
                "G89098OM"
            ],
            [
                "P02764-1",
                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
                "1981 Aug 25",
                "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A",
                "protein_xref_pubmed",
                "7263664",
                "protein_xref_glyconnect",
                "18",
                "G93742BI"
            ],
            [
                "P02764-1",
                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
                "1981 Aug 25",
                "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A",
                "protein_xref_pubmed",
                "7263664",
                "protein_xref_glyconnect",
                "18",
                "G20425TQ"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G28948UC"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G15956KF"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G39188ZX"
            ],
            [
                "P02764-1",
                "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.",
                "The Journal of biological chemistry",
                "1981 Aug 25",
                "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A",
                "protein_xref_pubmed",
                "7263664",
                "protein_xref_glyconnect",
                "18",
                "G18641IV"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G25520XG"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G91636VS"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G80858MF"
            ],
            [
                "P08289-1",
                "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.",
                "European journal of biochemistry",
                "1996 Mar 1",
                "Endo T, Fujiwara T, Ikehara Y, Kobata A",
                "protein_xref_pubmed",
                "8612632",
                "protein_xref_glyconnect",
                "12",
                "G49874UX"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Citations (GlyConnect)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-04-28T11:07:38.533264\n\nModified on\n   - 2020-04-28T11:09:38.064805\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_glyconnect.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_proteoform_citations_glycosylation_glyconnect.csv\n      Name: rat_proteoform_citations_glyconnect.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_proteoform_citations_glyconnect.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_proteoform_citations_glycosylation_glyconnect.csv"
}
