{
    "bcoid": "GLY_000466",
    "title": "HCV1b Protein Information (UniProtKB)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Information dataset contains hcv1b [taxid:11116] ...",
    "filename": "hcv1b_protein_info_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1b, isolate Japanese)",
        "molecule": "Protein",
        "tags": "Protein Information",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "POLG_HCVJA..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_mass"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_length"
                }
            ],
            [
                "P26662-1",
                "POLG_HCVJA",
                "327021",
                "3010"
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Information (UniProtKB)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-04-09T13:34:52.248699\n\nModified on\n   - 2020-04-09T18:16:05.796327\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Information dataset contains hcv1b [taxid:11116] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - UniProtKB entry id\n   - UniProtKB mnemonic name\n   - protein length\n   - protein mass\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1b_protein_masterlist.csv\n      URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/hcv1b_protein_masterlist.csv\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-hepatitis-c-virus-1b.nt\n   Output Subdomain\n      Name: hcv1b_protein_info_uniprotkb.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/hcv1b_protein_info_uniprotkb.csv\n      Name: hcv1b_protein_info_uniprotkb.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/hcv1b_protein_info_uniprotkb.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/hcv1b_protein_info_uniprotkb.csv"
}