{ "bcoid": "GLY_000461", "title": "Rat Germline Mutation", "description": "The Rat Germline Mutation dataset contains rat [taxid:10116] germline mutation data from EBI Variant ...", "filename": "rat_protein_mutation_germline.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Germline Mutations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P97594-1...", "69..." ], [ "P97594-1...", "69..." ] ], "headers": [ "uniprotkb_ca...", "aa_pos..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "aa_pos" }, { "type": "string", "label": "gene_name" }, { "type": "string", "label": "protein_name" }, { "type": "string", "label": "dbsnp_id" }, { "type": "string", "label": "cosmic_id" }, { "type": "string", "label": "description" }, { "type": "string", "label": "evidence_ECO:0000269" }, { "type": "string", "label": "evidence_ECO:0000313" }, { "type": "string", "label": "cytogenic_band" }, { "type": "string", "label": "chr_id" }, { "type": "string", "label": "chr_pos" }, { "type": "string", "label": "ref_nt" }, { "type": "string", "label": "alt_nt" }, { "type": "string", "label": "ref_aa" }, { "type": "string", "label": "alt_aa" }, { "type": "string", "label": "begin_aa_pos" }, { "type": "string", "label": "end_aa_pos" }, { "type": "string", "label": "minor_allelic_frequency" }, { "type": "string", "label": "mutation_type" }, { "type": "string", "label": "polyphen_score" }, { "type": "string", "label": "polyphen_prediction" }, { "type": "string", "label": "sift_score" }, { "type": "string", "label": "sift_prediction" }, { "type": "string", "label": "somatic_status" }, { "type": "string", "label": "disease" }, { "type": "string", "label": "disease_description" }, { "type": "string", "label": "disease_xrefs" }, { "type": "string", "label": "disease_evidence_ECO:0000269" }, { "type": "string", "label": "disease_evidence_ECO:0000313" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "mim_id" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "filter_flags" }, { "type": "string", "label": "glyco_annotation" } ], [ "P97594-1", "69", "Mcpt8l3", "Mast cell protease 8", "rs106682890", "", "", "", "", "15p13", "15", "34668519G>", "T", "null", "S", "R", "69", "69", "", "missense", "", "", "0.36", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs106682890", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NGS->NGR).", "glycancount:0, pmidcount:0" ], [ "P97594-1", "69", "Mcpt8l3", "Mast cell protease 8", "rs106682890", "", "", "", "", "15p13", "15", "34668519G>", "T", "null", "S", "R", "69", "69", "", "missense", "", "", "0.36", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs106682890", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NGS->NGR).", "glycancount:0, pmidcount:0" ], [ "P97594-1", "69", "Mcpt8", "Mast cell protease 8", "rs106682890", "", "", "", "", "15p13", "15", "34668519G>", "T", "null", "S", "R", "69", "69", "", "missense", "", "", "0.37", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs106682890", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NGS->NGR).", "glycancount:0, pmidcount:0" ], [ "P97594-1", "69", "Mcpt8", "Mast cell protease 8", "rs106682890", "", "", "", "", "15p13", "15", "34668519G>", "T", "null", "S", "R", "69", "69", "", "missense", "", "", "0.37", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs106682890", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NGS->NGR).", "glycancount:0, pmidcount:0" ], [ "Q9JLM2-1", "114", "Cd244", "Natural killer cell receptor 2B4", "rs105970872", "", "", "", "", "13q24", "13", "89984233A>", "T", "null", "R", "S", "114", "114", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs105970872", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NQR->NQS).", "glycancount:0, pmidcount:0" ], [ "Q9JLM2-1", "114", "Cd244", "Natural killer cell receptor 2B4", "rs105970872", "", "", "", "", "13q24", "13", "89984233A>", "T", "null", "R", "S", "114", "114", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs105970872", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NQR->NQS).", "glycancount:0, pmidcount:0" ], [ "E9PU17-1", "341", "Abca17", "ATP-binding cassette sub-family A member 17", "rs198808071", "", "", "", "", "10q12", "10", "13695815T>", "G", "null", "T", "P", "341", "341", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs198808071", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NTT->NPT).", "glycancount:0, pmidcount:0" ], [ "E9PU17-1", "341", "Abca17", "ATP-binding cassette sub-family A member 17", "rs198808071", "", "", "", "", "10q12", "10", "13695815T>", "G", "null", "T", "P", "341", "341", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs198808071", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NTT->NPT).", "glycancount:0, pmidcount:0" ], [ "Q9JLM2-1", "114", "Cd244", "Natural killer cell receptor 2B4", "rs105970872", "", "", "", "", "13q24", "13", "89984233A>", "T", "null", "R", "S", "114", "114", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs105970872", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NQR->NQS).", "glycancount:0, pmidcount:0" ], [ "Q9JLM2-1", "114", "Cd244", "Natural killer cell receptor 2B4", "rs105970872", "", "", "", "", "13q24", "13", "89984233A>", "T", "null", "R", "S", "114", "114", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs105970872", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NQR->NQS).", "glycancount:0, pmidcount:0" ], [ "O88277-1", "1059", "Fat2", "Protocadherin Fat 2", "rs198188269", "", "", "", "", "10q22", "10", "40654687C>", "T", "null", "D", "N", "1059", "1059", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs198188269", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (DDS->NDS).", "glycancount:0, pmidcount:0" ], [ "O88277-1", "1059", "Fat2", "Protocadherin Fat 2", "rs198188269", "", "", "", "", "10q22", "10", "40654687C>", "T", "null", "D", "N", "1059", "1059", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs198188269", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (DDS->NDS).", "glycancount:0, pmidcount:0" ], [ "O88279-1", "408", "Slit1", "Slit homolog 1 protein", "rs8154684", "", "", "", "", "1q54", "1", "260893908A>", "G", "null", "S", "P", "408", "408", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8154684", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLP).", "glycancount:0, pmidcount:0" ], [ "O88279-1", "408", "Slit1", "Slit homolog 1 protein", "rs8154684", "", "", "", "", "1q54", "1", "260893908A>", "G", "null", "S", "P", "408", "408", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8154684", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLP).", "glycancount:0, pmidcount:0" ], [ "O88279-1", "408", "Slit1", "Slit homolog 1 protein", "rs8154684", "", "", "", "", "1q54", "1", "260893908A>", "G", "null", "S", "P", "408", "408", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8154684", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLP).", "glycancount:0, pmidcount:0" ], [ "O88279-1", "408", "Slit1", "Slit homolog 1 protein", "rs8154684", "", "", "", "", "1q54", "1", "260893908A>", "G", "null", "S", "P", "408", "408", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8154684", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLP).", "glycancount:0, pmidcount:0" ], [ "Q63661-1", "67", "Muc4", "Mucin-4", "rs198403466", "", "", "", "", "11q22", "11", "71270190T>", "G", "null", "K", "N", "67", "67", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs198403466", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (KNT->NNT).", "glycancount:0, pmidcount:0" ], [ "Q63661-1", "67", "Muc4", "Mucin-4", "rs198403466", "", "", "", "", "11q22", "11", "71270190T>", "G", "null", "K", "N", "67", "67", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs198403466", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (KNT->NNT).", "glycancount:0, pmidcount:0" ], [ "Q63661-1", "470", "Muc4", "Mucin-4", "rs198406703", "", "", "", "", "11q22", "11", "71268978G>", "T", "null", "T", "K", "470", "470", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs198406703", "", "", "Germline mutation passed 1 out of 1 filters: o-glyco-site-loss (T->K).", "glycancount:0, pmidcount:0" ], [ "Q63661-1", "470", "Muc4", "Mucin-4", "rs198406703", "", "", "", "", "11q22", "11", "71268978G>", "T", "null", "T", "K", "470", "470", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs198406703", "", "", "Germline mutation passed 1 out of 1 filters: o-glyco-site-loss (T->K).", "glycancount:0, pmidcount:0" ], [ "Q64612-1", "894", "Ptprv", "Protein-tyrosine-phosphatase", "rs106600798", "", "", "", "", "13q13", "13", "51946098A>", "G", "null", "M", "T", "894", "894", "", "missense", "", "", "0.72", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs106600798", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NLM->NLT).", "glycancount:0, pmidcount:0" ], [ "Q64612-1", "894", "Ptprv", "Protein-tyrosine-phosphatase", "rs106600798", "", "", "", "", "13q13", "13", "51946098A>", "G", "null", "M", "T", "894", "894", "", "missense", "", "", "0.72", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs106600798", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NLM->NLT).", "glycancount:0, pmidcount:0" ], [ "O88778-1", "748", "Bsn", "Protein bassoon", "rs199280064", "", "", "", "", "8q32", "8", "116893632C>", "T", "null", "S", "N", "748", "748", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs199280064", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SGS->NGS).", "glycancount:0, pmidcount:0" ], [ "O88778-1", "748", "Bsn", "Protein bassoon", "rs199280064", "", "", "", "", "8q32", "8", "116893632C>", "T", "null", "S", "N", "748", "748", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs199280064", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SGS->NGS).", "glycancount:0, pmidcount:0" ], [ "P10252-1", "140", "Cd48", "CD48 antigen", "rs105755460", "", "", "", "", "13q24", "13", "90134274A>", "G", "null", "N", "D", "140", "140", "", "missense", "", "", "0.21", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs105755460", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLT->DLT).", "glycancount:0, pmidcount:0" ], [ "P10252-1", "140", "Cd48", "CD48 antigen", "rs105755460", "", "", "", "", "13q24", "13", "90134274A>", "G", "null", "N", "D", "140", "140", "", "missense", "", "", "0.21", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs105755460", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLT->DLT).", "glycancount:0, pmidcount:0" ], [ "P12346-1", "584", "Tf", "Serotransferrin", "rs8159084", "", "", "", "", "8q32", "8", "111698275C>", "T", "null", "D", "N", "584", "584", "", "missense", "", "", "0.23", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8159084", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (DGT->NGT).", "glycancount:0, pmidcount:0" ], [ "P12346-1", "584", "Tf", "Serotransferrin", "rs8159084", "", "", "", "", "8q32", "8", "111698275C>", "T", "null", "D", "N", "584", "584", "", "missense", "", "", "0.23", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8159084", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (DGT->NGT).", "glycancount:0, pmidcount:0" ], [ "P23897-1", "180", "Gucy2c", "Heat-stable enterotoxin receptor", "rs197093149", "", "", "", "", "4q43", "4", "170724546G>", "A", "null", "P", "S", "180", "180", "", "missense", "", "", "0.29", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs197093149", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NAP->NAS).", "glycancount:0, pmidcount:0" ], [ "P23897-1", "180", "Gucy2c", "Heat-stable enterotoxin receptor", "rs197093149", "", "", "", "", "4q43", "4", "170724546G>", "A", "null", "P", "S", "180", "180", "", "missense", "", "", "0.29", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs197093149", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NAP->NAS).", "glycancount:0, pmidcount:0" ], [ "Q07490-1", "39", "Cd24", "Signal transducer CD24", "rs8153694", "", "", "", "", "20q13", "20", "48339191G>", "A", "null", "S", "N", "39", "39", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8153694", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SIS->NIS); n-glyco-sequon-loss (NQS->NQN).", "glycancount:0, pmidcount:0" ], [ "Q07490-1", "39", "Cd24", "Signal transducer CD24", "rs8153694", "", "", "", "", "20q13", "20", "48339191G>", "A", "null", "S", "N", "39", "39", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8153694", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SIS->NIS); n-glyco-sequon-loss (NQS->NQN).", "glycancount:0, pmidcount:0" ], [ "Q9WTS8-1", "273", "Fcna", "Ficolin (Collagen/fibrinogen domain containing) 1", "rs8146711", "", "", "", "", "3p13", "3", "2850355G>", "A", "null", "T", "M", "273", "273", "", "missense", "", "", "0.12", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8146711", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NDT->NDM).", "glycancount:0, pmidcount:0" ], [ "Q9WTS8-1", "273", "Fcna", "Ficolin (Collagen/fibrinogen domain containing) 1", "rs8146711", "", "", "", "", "3p13", "3", "2850355G>", "A", "null", "T", "M", "273", "273", "", "missense", "", "", "0.12", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8146711", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NDT->NDM).", "glycancount:0, pmidcount:0" ], [ "Q6TXF5-1", "273", "Lrrc66", "Leucine-rich repeat-containing protein 66", "rs199145123", "", "", "", "", "14p11", "14", "37150267C>", "T", "null", "P", "S", "273", "273", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs199145123", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NTP->NTS).", "glycancount:0, pmidcount:0" ], [ "Q6TXF5-1", "273", "Lrrc66", "Leucine-rich repeat-containing protein 66", "rs199145123", "", "", "", "", "14p11", "14", "37150267C>", "T", "null", "P", "S", "273", "273", "", "missense", "", "", "1.0", "tolerated", "0", "", "", "", "", "", "protein_xref_ensembl", "rs199145123", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NTP->NTS).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "917", "Sspo", "SCO-spondin", "rs198757490", "", "", "", "", "4q24", "4", "78089681T>", "C", "null", "I", "T", "917", "917", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs198757490", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NCI->NCT).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "917", "Sspo", "SCO-spondin", "rs198757490", "", "", "", "", "4q24", "4", "78089681T>", "C", "null", "I", "T", "917", "917", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs198757490", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (NCI->NCT).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "2150", "Sspo", "SCO-spondin", "rs107361784", "", "", "", "", "4q24", "4", "78099423C>", "T", "null", "S", "L", "2150", "2150", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs107361784", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLL).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "2150", "Sspo", "SCO-spondin", "rs107361784", "", "", "", "", "4q24", "4", "78099423C>", "T", "null", "S", "L", "2150", "2150", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs107361784", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NLS->NLL).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "4859", "Sspo", "SCO-spondin", "rs107255801", "", "", "", "", "4q24", "4", "78129262G>", "A", "null", "S", "N", "4859", "4859", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs107255801", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SGT->NGT).", "glycancount:0, pmidcount:0" ], [ "Q700K0-1", "4859", "Sspo", "SCO-spondin", "rs107255801", "", "", "", "", "4q24", "4", "78129262G>", "A", "null", "S", "N", "4859", "4859", "", "missense", "", "", "", "", "0", "", "", "", "", "", "protein_xref_ensembl", "rs107255801", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-gain (SGT->NGT).", "glycancount:0, pmidcount:0" ], [ "Q9EPF2-1", "510", "Mcam", "Cell surface glycoprotein MUC18", "rs8170139", "", "", "", "", "8q22", "8", "48478726A>", "T", "null", "N", "Y", "510", "510", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_dbsnp", "rs8170139", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NTT->YTT).", "glycancount:0, pmidcount:0" ], [ "Q9EPF2-1", "510", "Mcam", "Cell surface glycoprotein MUC18", "rs8170139", "", "", "", "", "8q22", "8", "48478726A>", "T", "null", "N", "Y", "510", "510", "", "missense", "", "", "0.01", "deleterious", "0", "", "", "", "", "", "protein_xref_ensembl", "rs8170139", "", "", "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NTT->YTT).", "glycancount:0, pmidcount:0" ] ] }, "readme": "Name\n - Rat Germline Mutation\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-04-03T17:25:56.930719\n\nModified on\n - 2022-01-18T12:15:16.063460\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Germline Mutation dataset contains rat [taxid:10116] germline mutation data from EBI Variant Data API. Only nonsynonymous single-nucleotide variations (nsSNVs) germline mutations are integrated. The dataset is from 2019-11 UniProtKB release .If you use this dataset provide proper attribution to GlyGen and EBI-EMBL-UniProtKB. \n\nDescription Domain\n Keywords\n - single-nucleotide variations (nsSNVs)\n - germline mutations\n - dbSNP\n - disease\n - ClinVar\n\n Pipeline Steps\n - Step-1: The script extracts the germline (somatic_staus = 0) mutation data from the input file and maps the UniProtKB accession to the UniProtKB canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: dbSNP-rattus-norvegicus.tsv\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/dbSNP-rattus-norvegicus.tsv\n Output Subdomain\n Name: rat_protein_mutation_germline.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_mutation_germline.csv\n Name: rat_protein_mutation_germline.stat.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_mutation_germline.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_mutation_germline.csv" }