{ "bcoid": "GLY_000397", "title": "Rat Protein Submitted Names (UniProtKB)", "description": "The Rat Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for rat [taxid:10116] ...", "filename": "rat_protein_submittednames.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Submitted Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB44-1...", "Zinc finger ..." ], [ "D3ZB44-1...", "RCG27445..." ] ], "headers": [ "uniprotkb_ca...", "submitted_na..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "submitted_name_full" }, { "type": "string", "label": "submitted_name_short" }, { "type": "string", "label": "ec_name" } ], [ "D3ZB44-1", "Zinc finger protein 324", "", "" ], [ "D3ZB44-1", "RCG27445", "", "" ], [ "D3ZXJ3-1", "Zinc finger protein 78", "", "" ], [ "D3ZB49-1", "Similar to Protein C8orf1 (HT41) (Predicted), isoform CRA_b", "", "" ], [ "D3ZB49-1", "Oxidative stress-induced growth inhibitor family member 2", "", "" ], [ "D3ZB48-1", "Hook microtubule-tethering protein 1", "", "" ], [ "D3ZB48-1", "Hook homolog 1 (Drosophila) (Predicted)", "", "" ], [ "Q04462-1", "Valine--tRNA ligase", "", "" ], [ "A0A0G2JVG5-1", "Trichohyalin-like", "", "" ], [ "A0A0G2JVG6-1", "Uncharacterized protein", "", "" ], [ "A0A096MJY8-1", "Acetyl-CoA acetyltransferase 2-like 1", "", "" ], [ "B2GV58-1", "LSM14A mRNA-processing body assembly factor", "", "" ], [ "A0A096MJY1-1", "Similar to Gpc6 protein (Predicted)", "", "" ], [ "A0A096MJY1-1", "Glypican 6", "", "" ], [ "P56558-1", "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit", "", "" ], [ "A0A096MJY2-1", "Stomatin-like 3", "", "" ], [ "A0A096MJY2-1", "Stomatin (Epb7.2)-like 3 (Predicted), isoform CRA_a", "", "" ], [ "Q5RJK6-1", "Inositol polyphosphate-1-phosphatase", "", "" ], [ "Q5RJK6-1", "RCG22563", "", "" ], [ "Q63358-1", "Unconventional myosin-IXb", "", "" ], [ "Q63358-1", "Myosin 9b", "", "" ], [ "A0A1W2Q6N1-1", "MPL proto-oncogene, thrombopoietin receptor", "", "" ], [ "D4A4W8-1", "T, brachyury homolog (Mouse) (Predicted), isoform CRA_b", "", "" ], [ "D4A4W8-1", "T-box transcription factor T", "", "" ], [ "D4A4W1-1", "Family with sequence similarity 174, member B", "", "" ], [ "F7EN52-1", "Cyp46a1 protein", "", "" ], [ "F7EN52-1", "Cytochrome P450, family 46, subfamily a, polypeptide 1", "", "" ], [ "D4A4W4-1", "Abhydrolase domain containing 9 (Predicted)", "", "" ], [ "D4A4W4-1", "Epoxide hydrolase 3", "", "" ], [ "D4A4W6-1", "SRA stem-loop-interacting RNA-binding protein", "", "" ], [ "D4A4W6-1", "RCG20695, isoform CRA_b", "", "" ], [ "D4A4W7-1", "Mitochondria-localized glutamic acid-rich protein", "", "" ], [ "D4A4W7-1", "RCG50000, isoform CRA_c", "", "" ], [ "G3V6I3-1", "Coiled-coil domain containing 49 (Predicted)", "", "" ], [ "G3V6I3-1", "CWC25 spliceosome-associated protein homolog", "", "" ], [ "Q8K4K5-1", "Lethal(2) giant larvae protein homolog 1", "", "" ], [ "Q8K4K5-1", "RCG33798, isoform CRA_b", "", "" ], [ "Q4L0E8-1", "Regulator of G-protein signaling 18", "", "" ], [ "G3V6I6-1", "Adiponectin receptor 1", "", "" ], [ "G3V6I6-1", "Adiponectin receptor 1, isoform CRA_a", "", "" ], [ "A0A0G2K5E4-1", "DnaJ heat shock protein family (Hsp40) member A3", "", "" ], [ "G3V6I4-1", "Mitochondrial amidoxime reducing component 1", "", "" ], [ "G3V6I4-1", "RCG20363, isoform CRA_a", "", "" ], [ "P12749-1", "RCG33968, isoform CRA_a", "", "" ], [ "P12749-1", "60S ribosomal protein L26", "", "" ], [ "O08812-1", "Cationic amino acid transporter 3", "", "" ], [ "O08812-1", "Solute carrier family 7 (Cationic amino acid transporter, y+ system), member 3, isoform CRA_b", "", "" ], [ "A0A0G2K0T8-1", "Family with sequence similarity 25, member A", "", "" ], [ "A0A0G2K0T8-1", "RCG42313", "", "" ], [ "A0A0G2K0T4-1", "Uncharacterized protein", "", "" ], [ "Q6P6Q9-1", "Calcium uptake protein 1, mitochondrial", "", "" ], [ "A0A0G2K0T7-1", "Zinc finger protein 35", "", "" ], [ "Q5U1W2-1", "Proline-rich protein 13", "", "" ], [ "D3ZVR6-1", "SMC5-SMC6 complex localization factor 1", "", "" ], [ "D3ZVR6-1", "RCG44470", "", "" ], [ "A0A0G2K1A3-1", "Uncharacterized protein", "", "" ], [ "A0A0G2K1A1-1", "Zinc finger protein 706", "", "" ], [ "A0A0G2K1A1-1", "Uncharacterized protein LOC500855", "", "" ], [ "P33124-1", "Long-chain-fatty-acid--CoA ligase 6", "", "" ], [ "Q6MG12-1", "Hypothetical protein MGC:15854", "", "" ], [ "M0RB72-1", "Proline-rich 15-like", "", "" ], [ "M0RB72-1", "RCG34095", "", "" ], [ "D4A781-1", "Importin 5", "", "" ], [ "A0A0G2K8D0-1", "Similar to immunoglobulin superfamily, member 7", "", "" ], [ "P33568-1", "Retinoblastoma-associated protein", "", "" ], [ "E9PU34-1", "RCG41110", "", "" ], [ "E9PU34-1", "Required for meiotic nuclear division 1 homolog", "", "" ], [ "Q8CJ58-1", "Clarin-1", "", "" ], [ "P07727-1", "Glycine receptor subunit alpha-1", "", "" ], [ "P07727-1", "Glycine alpha 1, truncated", "", "" ], [ "P83748-1", "Serine protease 30", "", "" ], [ "P20420-1", "Neuronal nicotinic acetylcholine receptor alpha5 subunit", "", "" ], [ "P20420-1", "Neuronal acetylcholine receptor subunit alpha-5", "", "" ], [ "A0A0G2JTB2-1", "1,4-alpha-glucan-branching enzyme 1", "", "" ], [ "M0R8G5-1", "IgA-inducing protein", "", "" ], [ "D3ZGR6-1", "Coiled-coil domain-containing 138", "", "" ], [ "D3ZGR7-1", "Telomerase RNA component-interacting RNase", "", "" ], [ "D3ZGR7-1", "RCG51149", "", "" ], [ "D3ZGR5-1", "Ankyrin repeat domain-containing protein 12-like", "", "" ], [ "D3ZIY3-1", "YTH N(6)-methyladenosine RNA-binding protein 3", "", "" ], [ "D3ZIY3-1", "YTH domain family 3 (Predicted), isoform CRA_b", "", "" ], [ "D3ZHU7-1", "Methyl-CpG-binding domain protein 3-like 2", "", "" ], [ "D3ZSP2-1", "NACHT, LRR and PYD domains-containing protein 4B-like", "", "" ], [ "D3ZFP5-1", "Similar to Robo-1", "", "" ] ] }, "readme": "Name\n - Rat Protein Submitted Names (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-15T13:43:53.106298\n\nModified on\n - 2020-03-16T11:16:17.615859\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for rat [taxid:10116] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot.. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein submitted name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_submittednames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_submittednames.csv\n Name: rat_protein_submittednames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_submittednames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_submittednames.csv" }