{ "bcoid": "GLY_000396", "title": "Mouse Protein Submitted Names (UniProtKB)", "description": "The Mouse Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for mouse [taxid:10090] ...", "filename": "mouse_protein_submittednames.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Submitted Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "E9Q287-1...", "A disintegri..." ], [ "Q922G0-1...", "Solute carri..." ] ], "headers": [ "uniprotkb_ca...", "submitted_na..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "submitted_name_full" }, { "type": "string", "label": "submitted_name_short" }, { "type": "string", "label": "ec_name" } ], [ "E9Q287-1", "A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3", "", "" ], [ "Q922G0-1", "Solute carrier family 25 member 36", "", "" ], [ "O35453-1", "Serine protease hepsin", "", "" ], [ "Q80T32-1", "Gpr133 protein", "", "" ], [ "Q80T32-1", "Adhesion G-protein-coupled receptor D1", "", "" ], [ "P62492-1", "Ras-related protein Rab-11A", "", "" ], [ "E9Q3P4-1", "Centromere protein F", "", "" ], [ "P63166-1", "Small ubiquitin-related modifier 1", "", "" ], [ "A0A087WPJ1-1", "RIKEN cDNA 1700017N19 gene", "", "" ], [ "B2RX88-1", "Centrosome and spindle pole-associated protein 1", "", "" ], [ "A0A087WRQ3-1", "T cell receptor alpha variable 1", "", "" ], [ "A5H0M4-1", "POTE ankyrin domain family, member G", "", "" ], [ "A5H0M4-1", "GSARP1", "", "" ], [ "Q9CWR0-1", "Rho guanine nucleotide exchange factor 25", "", "" ], [ "A2RSJ4-1", "UHRF1-binding protein 1-like", "", "" ], [ "Q91YE9-1", "Cytosolic 5'-nucleotidase 1B", "", "" ], [ "Q02853-1", "Stromelysin-3", "", "" ], [ "Q6DYE8-1", "Ectonucleotide pyrophosphatase/phosphodiesterase family member 3", "", "" ], [ "P36536-1", "GTP-binding protein SAR1a", "", "" ], [ "Q9R092-1", "17-beta-hydroxysteroid dehydrogenase type 6", "", "" ], [ "A0A0U1RNG7-1", "Potassium channel tetramerisation domain-containing 14", "", "" ], [ "O35309-1", "N-myc-interactor", "", "" ], [ "Q8BTY1-1", "Kynurenine--oxoglutarate transaminase 1", "", "" ], [ "Q61216-1", "MRE11A homolog A, double strand break repair nuclease", "", "" ], [ "Q9JHX3-1", "Interleukin-21 receptor", "", "" ], [ "Q3TLD5-1", "Unconventional prefoldin RPB5 interactor", "", "" ], [ "A0A0U1RNG7-1", "Potassium channel tetramerisation domain-containing 14", "", "" ], [ "Q9QYC7-1", "Vitamin K-dependent gamma-carboxylase", "", "" ], [ "P10852-1", "4F2 cell-surface antigen heavy chain", "", "" ], [ "Q8K2F8-1", "Protein LSM14 homolog A", "", "" ], [ "B2RRA8-1", "Zinc finger protein 114", "", "" ], [ "Q3UMR0-1", "Ankyrin repeat domain-containing protein 27", "", "" ], [ "Q8CHS4-1", "PI-PLC X domain-containing protein 1", "", "" ], [ "P30282-1", "G1/S-specific cyclin-D3", "", "" ], [ "P97411-1", "Islet cell autoantigen 1", "", "" ], [ "Q3UHI0-1", "Serine-rich coiled-coil domain-containing protein 2", "", "" ], [ "Q80TT2-1", "BAI1-associated protein 3", "", "" ], [ "S4R213-1", "Lactamase, beta-like 1", "", "" ], [ "Q91VV4-1", "DENN domain-containing protein 2D", "", "" ], [ "Q9CWR2-1", "Histone-lysine N-methyltransferase SMYD3", "", "" ], [ "Q9D0M3-1", "Cytochrome c1, heme protein, mitochondrial", "", "" ], [ "Q9WTP3-1", "SAM pointed domain-containing Ets transcription factor", "", "" ], [ "B8JJZ7-1", "Zinc finger protein 81", "", "" ], [ "A0A3Q4EGJ1-1", "Predicted gene 5155", "", "" ], [ "D3YVV3-1", "Ankyrin repeat domain 29", "", "" ], [ "P33587-1", "Vitamin K-dependent protein C", "", "" ], [ "Q8BXQ6-1", "Aminopeptidase O", "", "" ], [ "Q3TX08-1", "tRNA (guanine(26)-N(2))-dimethyltransferase", "", "" ], [ "E9PYR1-1", "F-box and leucine-rich repeat protein 18", "", "" ], [ "P04760-1", "Acetylcholine receptor subunit gamma", "", "" ], [ "P59808-1", "SAM and SH3 domain-containing protein 1", "", "" ], [ "Q91UZ1-1", "Phospholipase C, beta 4", "", "" ], [ "Q61418-1", "H(+)/Cl(-) exchange transporter 4", "", "" ], [ "Q9D387-1", "Lysosome-associated membrane glycoprotein 5", "", "" ], [ "P25425-1", "POU domain, class 2, transcription factor 1", "", "" ], [ "B1ASB6-1", "SPOC domain-containing protein 1", "", "" ], [ "Q9D515-1", "Slx-like 1", "", "" ], [ "Q9D8K8-1", "Solute carrier family 25 member 39", "", "" ], [ "Q9D519-1", "Spermatogenesis-associated multipass transmembrane protein 2b", "", "" ], [ "Q61161-1", "Mitogen-activated protein kinase kinase kinase kinase 2", "", "" ], [ "O55087-1", "Myocyte enhancer factor 2B", "", "" ], [ "O55087-1", "Myocyte-specific enhancer factor 2B", "", "" ], [ "P70331-1", "MyoD family inhibitor", "", "" ], [ "F6ZPB0-1", "Predicted gene 21981", "", "" ], [ "F6ZPB0-1", "Prickle planar cell polarity protein 4", "", "" ], [ "Q9R210-1", "Transcription factor EB", "", "" ], [ "P58462-1", "Forkhead box protein P1", "", "" ], [ "P58462-1", "Forkhead box protein P1", "", "" ], [ "Q8BLQ7-1", "Cationic amino acid transporter 4", "", "" ], [ "Q8K2A8-1", "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "", "" ], [ "Q8BWU3-1", "Protein FAM131A", "", "" ], [ "Q7TQ33-1", "Repulsive guidance molecule B", "", "" ], [ "Q9Z1T1-1", "AP-3 complex subunit beta-1", "", "" ], [ "P70323-1", "T-box transcription factor TBX1", "", "" ], [ "Q8CHC4-1", "Synaptojanin-1", "", "" ], [ "Q8K2J4-1", "Coiled-coil domain-containing protein 14", "", "" ], [ "A0A0G2JEU8-1", "T cell receptor alpha variable 13N-1", "", "" ], [ "Q80VU4-1", "Neurotrophin 5", "", "" ], [ "L0N7N1-1", "Kinesin-like protein KIF14", "", "" ], [ "L0N7N1-1", "Truncated kinesin family member 14", "", "" ], [ "Q9R061-1", "Cytosolic Fe-S cluster assembly factor NUBP2", "", "" ], [ "P59672-1", "Ankyrin repeat and SAM domain containing 1", "", "" ], [ "Q497P9-1", "Predicted gene 5941", "", "" ], [ "Q497P9-1", "Predicted gene, EG546347", "", "" ] ] }, "readme": "Name\n - Mouse Protein Submitted Names (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-15T13:39:36.626348\n\nModified on\n - 2020-03-16T11:15:40.779396\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for mouse [taxid:10090] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein submitted name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/mouse_protein_masterlist.csv\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_submittednames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_submittednames.csv\n Name: mouse_protein_submittednames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_submittednames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_submittednames.csv" }