{ "bcoid": "GLY_000395", "title": "Human Protein Submitted Names (UniProtKB)", "description": "The Human Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for human [taxid:9606] ...", "filename": "human_protein_submittednames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Submitted Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q92994-1...", "BRF1 protein..." ], [ "Q92994-1...", "Transcriptio..." ] ], "headers": [ "uniprotkb_ca...", "submitted_na..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "submitted_name_full" }, { "type": "string", "label": "submitted_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q92994-1", "BRF1 protein", "", "" ], [ "Q92994-1", "Transcription factor IIIB 90 kDa subunit", "", "" ], [ "Q9Y2R9-1", "28S ribosomal protein S7, mitochondrial", "", "" ], [ "Q92614-1", "Unconventional myosin-XVIIIa", "", "" ], [ "P10242-1", "Transcriptional activator Myb", "", "" ], [ "Q9GZW8-1", "Membrane-spanning 4-domains subfamily A member 7", "", "" ], [ "O14817-1", "Tetraspanin-4", "", "" ], [ "A2RU30-1", "Protein TESPA1", "", "" ], [ "Q6UWY5-1", "Olfactomedin-like protein 1", "", "" ], [ "Q6IQ23-1", "Pleckstrin homology domain-containing family A member 7", "", "" ], [ "Q8N6H7-1", "ADP-ribosylation factor GTPase-activating protein 2", "", "" ], [ "P25705-1", "ATP synthase subunit alpha, mitochondrial", "", "" ], [ "Q6UW68-1", "Transmembrane protein 205", "", "" ], [ "Q9BUZ4-1", "TNF receptor-associated factor 4", "", "" ], [ "Q8NC06-1", "Acyl-CoA-binding domain-containing protein 4", "", "" ], [ "Q8NC06-1", "Acyl-CoA binding domain containing 4 isoform 4", "", "" ], [ "Q8NC06-1", "Acyl-Coenzyme A binding domain containing 4, isoform CRA_b", "", "" ], [ "Q8IYT4-1", "Katanin p60 ATPase-containing subunit A-like 2", "", "" ], [ "A6NC51-1", "Modulator of macroautophagy TMEM150B", "", "" ], [ "Q13829-1", "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2", "", "" ], [ "Q8NBW4-1", "cDNA FLJ16675 fis, clone TKIDN2005956, weakly similar to Putative amino-acid permease F13H10.3", "", "" ], [ "Q8NBW4-1", "Sodium-coupled neutral amino acid transporter 9", "", "" ], [ "Q14766-1", "Latent-transforming growth factor beta-binding protein 1", "", "" ], [ "P62873-1", "cDNA FLJ16663 fis, clone THYMU2005759, highly similar to Guanine nucleotide-binding proteinG(I)/G(S)/G(T) subunit beta 1", "", "" ], [ "P62873-1", "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "", "" ], [ "P11310-1", "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial", "", "" ], [ "Q9Y691-1", "Calcium-activated potassium channel subunit beta-2", "", "" ], [ "O60506-1", "Heterogeneous nuclear ribonucleoprotein Q", "", "" ], [ "Q969N2-1", "GPI transamidase component PIG-T", "", "" ], [ "P09471-1", "Guanine nucleotide-binding protein G(o) subunit alpha", "", "" ], [ "Q9NXE4-1", "Sphingomyelin phosphodiesterase 4", "", "" ], [ "Q9Y4J8-1", "Dystrobrevin alpha", "", "" ], [ "Q5ZPR3-1", "CD276 antigen", "", "" ], [ "P29692-1", "Elongation factor 1-delta", "", "" ], [ "Q9GZS3-1", "WD repeat-containing protein 61", "", "" ], [ "Q96R06-1", "Sperm-associated antigen 5", "", "" ], [ "Q96L93-1", "Kinesin-like protein KIF16B", "", "" ], [ "Q13228-1", "Methanethiol oxidase", "", "" ], [ "P02741-1", "C-reactive protein", "", "" ], [ "P29353-1", "SHC-transforming protein 1", "", "" ], [ "Q9H4G0-1", "Band 4.1-like protein 1", "", "" ], [ "Q9Y547-1", "Chromosome 1 open reading frame 41, isoform CRA_b", "", "" ], [ "Q9Y547-1", "Intraflagellar transport protein 25 homolog", "", "" ], [ "Q8N720-1", "Zinc finger protein 655", "", "" ], [ "Q92562-1", "Polyphosphoinositide phosphatase", "", "" ], [ "P38935-1", "DNA-binding protein SMUBP-2", "", "" ], [ "O15078-1", "Centrosomal protein of 290 kDa", "", "" ], [ "Q8TF17-1", "SH3 domain and tetratricopeptide repeat-containing protein 2", "", "" ], [ "Q9BYV8-1", "Centrosomal protein of 41 kDa", "", "" ], [ "Q8TB36-1", "Ganglioside-induced differentiation-associated protein 1", "", "" ], [ "O60733-1", "85/88 kDa calcium-independent phospholipase A2", "", "" ], [ "Q8NI17-1", "Interleukin-31 receptor subunit alpha", "", "" ], [ "Q3C1V0-1", "Membrane-spanning 4-domains subfamily A member 18", "", "" ], [ "Q96QE4-1", "Leucine-rich repeat-containing protein 37B", "", "" ], [ "Q9P0K1-1", "Disintegrin and metalloproteinase domain-containing protein 22", "", "" ], [ "P49841-1", "Glycogen synthase kinase-3 beta", "", "" ], [ "Q96IK0-1", "Transmembrane protein 101", "", "" ], [ "Q7Z7G2-1", "Complexin-4", "", "" ], [ "Q7Z7G2-1", "Complexin 4, isoform CRA_a", "", "" ], [ "Q9H9Q4-1", "Non-homologous end-joining factor 1", "", "" ], [ "Q5VYV7-1", "Protein SLX4IP", "", "" ], [ "Q8N6T0-1", "Chromosome 11 open reading frame 80", "", "" ], [ "Q9UGK8-1", "Secretion-regulating guanine nucleotide exchange factor", "", "" ], [ "Q8NCR3-1", "Chromosome 11 open reading frame 65", "", "" ], [ "Q8N7N1-1", "Putative protein N-methyltransferase FAM86B1", "", "" ], [ "Q9H3V2-1", "Membrane-spanning 4-domains subfamily A member 5", "", "" ], [ "Q9NQ36-1", "Signal peptide, CUB and EGF-like domain-containing protein 2", "", "" ], [ "Q99613-1", "Eukaryotic translation initiation factor 3 subunit C", "", "" ], [ "P17027-1", "Zinc finger protein 23", "", "" ], [ "P35637-1", "RNA-binding protein FUS", "", "" ], [ "Q9UL33-1", "Trafficking protein particle complex subunit 2-like protein", "", "" ], [ "Q9UPN3-1", "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5", "", "" ], [ "Q99613-1", "Eukaryotic translation initiation factor 3 subunit C", "", "" ], [ "O00458-1", "Interferon-related developmental regulator 1", "", "" ], [ "Q8WY36-1", "HMG box transcription factor BBX", "", "" ], [ "O75635-1", "Serpin B7", "", "" ], [ "Q6UXY1-1", "Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 2", "", "" ], [ "Q92925-1", "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2", "", "" ], [ "Q92925-1", "SMARCD2 protein", "", "" ], [ "Q02338-1", "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "", "" ], [ "Q13427-1", "Peptidyl-prolyl cis-trans isomerase G", "", "" ], [ "Q9Y4J8-1", "Dystrobrevin alpha", "", "" ], [ "Q96Q42-1", "Alsin", "", "" ], [ "O15033-1", "Apoptosis-resistant E3 ubiquitin protein ligase 1", "", "" ] ] }, "readme": "Name\n - Human Protein Submitted Names (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-15T13:38:29.540245\n\nModified on\n - 2020-04-10T11:49:36.985464\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for human [taxid:9606] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein submitted name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_submittednames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_submittednames.csv\n Name: human_protein_submittednames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_submittednames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_submittednames.csv" }