{
    "bcoid": "GLY_000342",
    "title": "Glycans with NeuAc (Customized table)",
    "description": "The dataset provides glycans that have at least one \"NeuAc\" residue in the current GlyGen dataset (https://data.glygen.org/GLYDS000281). ...",
    "filename": "glycan_species_customized_neuac_neugc.csv",
    "filetype": "csv",
    "categories": {
        "molecule": "Glycan",
        "tags": "Mammalian species annotation",
        "status": "Reviewed",
        "file_type": "csv",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "10114..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "tax_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "tax_name"
                },
                {
                    "type": "string",
                    "label": "annotation_category"
                },
                {
                    "type": "string",
                    "label": "source"
                },
                {
                    "type": "string",
                    "label": "source_id"
                },
                {
                    "type": "string",
                    "label": "original_source_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "is_motif"
                }
            ],
            [
                "G00002CF",
                "10114",
                "Rattus",
                "Subsumption",
                "GNOme",
                "G84891DZ",
                "",
                "glycan_xref_gnome",
                "G84891DZ",
                "False"
            ]
        ]
    },
    "readme": "Name\n   - Glycans with NeuAc (Customized table)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-03-02T14:23:10.848312\n\nModified on\n   - 2022-01-12T16:48:11.074741\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides glycans that have at least one \"NeuAc\" residue in the current GlyGen dataset (https://data.glygen.org/GLYDS000281). The GlyTouCan accessions included in this list have mammalian species annotation (human/mouse/rat) through direct TaxID annotation and/or inferred via subsumption. This table was customized based on a GlyGen user query submitted through GlyGen help on Feb 17th 2020.\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - NeuAc\n   - Mammalian species annotation \n\n   Pipeline Steps\n   - Step-1: Based on the submitted user query (different sialic acid-containing mammalian glycan structures reported in your database), the  list of glycans that have \"NeuAc\" were from input file 1 (monocomp.tsv;column:5 ;filter:not \"0\"). The selected GlyTouCan accessions were mapped to input file 2 (glycan_species.tsv) where the value is \"true\".  \n\nExecution Domain\n   Scripts   - N/A\n\n\n   Software Prerequisites\n      Name: LINUX\n      Version: -\n      URI: \n\nI/O Domain\n   Input Subdomain\n      Name: monocomp.tsv\n      URI: https://data.glygen.org//ln2downloads/glytoucan/gtc_06_30_2021/export/monocomp.tsv\n   Output Subdomain\n      Name: glycan_species_customized_neuac_neugc.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_species_customized_neuac_neugc.csv\n      Name: glycan_species_customized_neuac_neugc.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_species_customized_neuac_neugc.stat.csv",
    "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_species_customized_neuac_neugc.csv"
}