{ "bcoid": "GLY_000307", "title": "Glycan Xref UniCarbKB", "description": "The dataset provides cross-references to UniCarbKB ID(s) for the associated glycan (GlyTouCan Accession). ...", "filename": "glycan_xref_unicarbkb.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "UniCarbKB cross-references", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00031MO...", "4..." ], [ "G00032MO...", "G00032MO..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G00031MO", "4", "glycan_xref_unicarbkb" ], [ "G00032MO", "G00032MO", "glycan_xref_unicarbkb" ], [ "G00176HZ", "3287", "glycan_xref_unicarbkb" ], [ "G00194GV", "comp_HexNAc1Hex0dHex1NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G00227RN", "7149", "glycan_xref_unicarbkb" ], [ "G00281HB", "7675", "glycan_xref_unicarbkb" ], [ "G00395TQ", "2553", "glycan_xref_unicarbkb" ], [ "G00463XD", "7453", "glycan_xref_unicarbkb" ], [ "G00551JZ", "4799", "glycan_xref_unicarbkb" ], [ "G00553AN", "7817", "glycan_xref_unicarbkb" ], [ "G00800WJ", "7151", "glycan_xref_unicarbkb" ], [ "G00841YH", "comp_HexNAc2Hex4dHex0NeuAc3NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G00912UN", "G00912UN", "glycan_xref_unicarbkb" ], [ "G00912UN", "comp_HexNAc4Hex5dHex0NeuAc2NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G00986YT", "3391", "glycan_xref_unicarbkb" ], [ "G01040ZV", "G01040ZV", "glycan_xref_unicarbkb" ], [ "G01367ZS", "7940", "glycan_xref_unicarbkb" ], [ "G01367ZS", "G01367ZS", "glycan_xref_unicarbkb" ], [ "G01550VZ", "comp_HexNAc4Hex5dHex0NeuAc0NeuGc0Pent0S1P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01600VV", "3457", "glycan_xref_unicarbkb" ], [ "G01614ZM", "7665", "glycan_xref_unicarbkb" ], [ "G01614ZM", "96", "glycan_xref_unicarbkb" ], [ "G01633XH", "comp_HexNAc3Hex3dHex4NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01650EU", "comp_HexNAc3Hex6dHex0NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01659NO", "7435", "glycan_xref_unicarbkb" ], [ "G01664MY", "comp_HexNAc1Hex1dHex0NeuAc0NeuGc0Pent0S1P0KDN0HexA1", "glycan_xref_unicarbkb_comp" ], [ "G01769FS", "3915", "glycan_xref_unicarbkb" ], [ "G01769OH", "comp_HexNAc0Hex3dHex0NeuAc2NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01817YC", "7152", "glycan_xref_unicarbkb" ], [ "G01879YS", "comp_HexNAc1Hex2dHex1NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01937VC", "comp_HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P1KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G01954BU", "3567", "glycan_xref_unicarbkb" ], [ "G02000AU", "7663", "glycan_xref_unicarbkb" ], [ "G02057QV", "comp_HexNAc5Hex6dHex0NeuAc2NeuGc1Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02287BL", "comp_HexNAc6Hex7dHex2NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02311IE", "1985", "glycan_xref_unicarbkb" ], [ "G02402FF", "7608", "glycan_xref_unicarbkb" ], [ "G02438LG", "comp_HexNAc0Hex0dHex1NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02447BS", "comp_HexNAc6Hex7dHex2NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02561FC", "4794", "glycan_xref_unicarbkb" ], [ "G02661MY", "3463", "glycan_xref_unicarbkb" ], [ "G02809YH", "comp_HexNAc3Hex2dHex1NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02815KT", "G02815KT", "glycan_xref_unicarbkb" ], [ "G02815KT", "comp_HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02860WV", "comp_HexNAc2Hex6dHex1NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G02886BB", "comp_HexNAc4Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03081ER", "7804", "glycan_xref_unicarbkb" ], [ "G03200OR", "G03200OR", "glycan_xref_unicarbkb" ], [ "G03216SJ", "3385", "glycan_xref_unicarbkb" ], [ "G03238UC", "comp_HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P1KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03275SD", "4473", "glycan_xref_unicarbkb" ], [ "G03343NG", "comp_HexNAc6Hex6dHex1NeuAc2NeuGc1Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03416EW", "G03416EW", "glycan_xref_unicarbkb" ], [ "G03574QJ", "comp_HexNAc3Hex6dHex1NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03584KV", "5606", "glycan_xref_unicarbkb" ], [ "G03595ET", "G03595ET", "glycan_xref_unicarbkb" ], [ "G03596YS", "comp_HexNAc5Hex6dHex2NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03599PQ", "comp_HexNAc2Hex3dHex0NeuAc2NeuGc0Pent0S1P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03717EM", "3303", "glycan_xref_unicarbkb" ], [ "G03717EM", "G03717EM", "glycan_xref_unicarbkb" ], [ "G03802LT", "7527", "glycan_xref_unicarbkb" ], [ "G03860PZ", "1843", "glycan_xref_unicarbkb" ], [ "G03895SR", "5147", "glycan_xref_unicarbkb" ], [ "G03930BU", "comp_HexNAc3Hex4dHex3NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03962UW", "comp_HexNAc6Hex9dHex1NeuAc1NeuGc1Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03964PW", "comp_HexNAc4Hex6dHex1NeuAc0NeuGc1Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G03984TW", "7521", "glycan_xref_unicarbkb" ], [ "G04055MU", "comp_HexNAc9Hex7dHex1NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04077XA", "7727", "glycan_xref_unicarbkb" ], [ "G04203ZT", "comp_HexNAc3Hex0dHex0NeuAc0NeuGc0Pent0S1P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04483SK", "3389", "glycan_xref_unicarbkb" ], [ "G04505IS", "G04505IS", "glycan_xref_unicarbkb" ], [ "G04595ZA", "7907", "glycan_xref_unicarbkb" ], [ "G04612UW", "comp_HexNAc5Hex6dHex0NeuAc2NeuGc0Pent0S1P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04681UD", "comp_HexNAc1Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04744XB", "3397", "glycan_xref_unicarbkb" ], [ "G04784US", "comp_HexNAc5Hex6dHex3NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04791QM", "1105", "glycan_xref_unicarbkb" ], [ "G04854VP", "comp_HexNAc8Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G04909DG", "7698", "glycan_xref_unicarbkb" ], [ "G04959WS", "4819", "glycan_xref_unicarbkb" ], [ "G05049IC", "comp_HexNAc6Hex6dHex2NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G05051WF", "comp_HexNAc6Hex7dHex0NeuAc1NeuGc1Pent0S0P0KDN0HexA0", "glycan_xref_unicarbkb_comp" ], [ "G05229BF", "3475", "glycan_xref_unicarbkb" ] ] }, "readme": "Name\n - Glycan Xref UniCarbKB\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-11-14T12:09:00.597068\n\nModified on\n - 2020-05-01T15:15:45.987205\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to UniCarbKB ID(s) for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/;http://www.glycome-db.org/; http://www.unicarbkb.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - UnicarbKB\n - Cross-references\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: unicarbkb.tsv\n URI: https://data.glygen.org//ln2downloads/glytoucan/gtc_06_30_2021/export/unicarbkb.tsv\n Output Subdomain\n Name: glycan_xref_unicarbkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_xref_unicarbkb.csv\n Name: glycan_xref_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_xref_unicarbkb.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_xref_unicarbkb.csv" }