{ "bcoid": "GLY_000281", "title": "GlyGen-Glycan masterlist", "description": "The dataset provides information on the glycan properties such as mass, permethylated mass, topology, ...", "filename": "glycan_masterlist.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Properties", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00002CF...", "Topology..." ], [ "G00009BX...", "Saccharide..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ty..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_type" }, { "type": "string", "label": "glycan_mass" }, { "type": "string", "label": "glycan_permass" }, { "type": "string", "label": "base_composition" }, { "type": "string", "label": "composition" }, { "type": "string", "label": "topology" }, { "type": "string", "label": "monosaccharides" }, { "type": "string", 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"G22979OY", "G27653YS", "4", "True", "0" ], [ "G00053MO", "Saccharide", "820.29608631", "1030.53083736", "G42932DS", "G58879PQ", "G12750SG", "4", "True", "0" ], [ "G00054MO", "Saccharide", "820.29608631", "1030.53083736", "G42932DS", "G58879PQ", "G12750SG", "4", "True", "0" ], [ "G00055MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2", "True", "0" ], [ "G00056HH", "Saccharide", "2151.78227759", "2670.36133019", "G44211QA", "G15715XI", "G10328BW", "12", "False", "432" ], [ "G00056MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2", "True", "0" ], [ "G00057LF", "Composition", "1931.68758926", "2408.21969164", "G15175QG", "G00057LF", "", "10", "False", "8424" ], [ "G00057MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G31801IX", "2", "False", "0" ], [ "G00058MO", "Saccharide", "748.27495691", "944.49405789", "G53434XO", "G83574AW", "G72872SQ", "4", "True", "0" ], [ "G00058XR", 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"G37772BP", "G90852NI", "3", "False", "0" ], [ "G00066MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G30886AB", "G11863LK", "3", "False", "0" ], [ "G00066WY", "Composition", "910.32778041", "1148.5938316", "G28681TP", "G00066WY", "", "5", "False", "8030" ], [ "G00067MO", "Saccharide", "488.17412057", "628.33062127", "G89864HJ", "G09551MC", "G49295JM", "3", "False", "0" ], [ "G00068MO", "Saccharide", "326.12129707", "424.23084756", "G08453HV", "G53862OE", "G44794CK", "2", "False", "0" ], [ "G00069MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4", "False", "492" ], [ "G00070MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4", "False", "492" ], [ "G00071MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G07227QC", "4", "False", "492" ], [ "G00072MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G15216HY", "4", "False", "492" ], [ "G00076PK", "Saccharide", "545.195584305", "699.367735075", "G05394UY", "G22331NZ", "G24735SG", "3", "False", "0" ], [ "G00082CQ", "BaseComposition", "648.17490849", "830.3783594", "G00082CQ", "", "", "4", "False", "10000" ], [ "G00087BY", "Composition", "2198.72886182", "2689.27661427", "G21331WE", "G00087BY", "", "11", "False", "8030" ], [ "G00089VH", "Saccharide", "2019.70363329", "2524.2670358", "G75764QI", "G43275VO", "G33365UE", "10", "False", "196" ], [ "G00090SL", "Saccharide", "344.13186177", "470.2727124", "", "G19829NV", "G95084EB", "2", "False", "0" ], [ "G00091RT", "Saccharide", "828.2746822", "1066.54073339", "G84322TE", "G87830MO", "G75449PM", "5", "False", "0" ], [ "G00094SE", "Saccharide", "1300.49161099", "1608.83591253", "G60060GI", "G40547YM", "G15654DH", "7", "False", "0" ], [ "G00097DN", "Saccharide", "312.105647", "410.21519749", "G25325JY", "G71058CB", "G38979OV", "2", "False", "0" ], [ "G00105XF", "Topology", "1931.68758926", "2408.21969164", "G15175QG", "G91360AG", "G00105XF", "10", "False", "2102" ] ] }, "readme": "Name\n - GlyGen-Glycan masterlist\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-11-13T12:43:51.676216\n\nModified on\n - 2022-01-12T16:18:09.207444\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan properties such as mass, permethylated mass, topology, base composition, composition and the number of monosaccharides for the associated glycan (GlyTouCan Accession). This dataset is the master-list of the GlyTouCan accessions currently present in GlyGen. Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Properties\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to process the dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_properties.tsv\n URI: https://data.glygen.org//ln2downloads/glytoucan/gtc_06_30_2021/export/glycan_properties.tsv\n Output Subdomain\n Name: glycan_masterlist.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_masterlist.csv\n Name: glycan_masterlist.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/glycan_masterlist.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/glycan_masterlist.csv" }