{ "bcoid": "GLY_000265", "title": "Rat Protein Alternative Name (UniProtKB)", "description": "The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] ...", "filename": "rat_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q0HA29-1...", "Nicotinate-n..." ], [ "Q0HA29-1...", "Nicotinamide..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q0HA29-1", "Nicotinate-nucleotide adenylyltransferase 2", "NaMN adenylyltransferase 2", "" ], [ "Q0HA29-1", "Nicotinamide mononucleotide adenylyltransferase 2", "NMN adenylyltransferase 2", "" ], [ "Q99372-1", "Tropoelastin", "", "" ], [ "Q07969-1", "Glycoprotein IIIb", "GPIIIB", "" ], [ "Q07969-1", "Platelet glycoprotein IV", "GPIV", "" ], [ "Q07969-1", "Fatty acid translocase", "", "" ], [ "Q07969-1", "PAS-4", "", "" ], [ "Q07969-1", "Fatty acid transport protein", "", "" ], [ "Q07969-1", "PAS IV", "", "" ], [ "Q07969-1", "Adipocyte membrane protein", "", "" ], [ "A0A096MJY4-1", "Myocyte enhancer factor 2C", "", "" ], [ "A0A0G2K4P4-1", "Coiled-coil domain-containing protein 176", "", "" ], [ "P01946-1", "Alpha-1/2-globin", "", "" ], [ "P01946-1", "Hemoglobin alpha-1/2 chain", "", "" ], [ "Q5M9G9-1", "Protein TBRG4", "", "" ], [ "Q5M9G9-1", "Transforming growth factor beta regulator 4", "", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GOS-15", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GS15", "" ], [ "O35152-1", "Vesicle transport protein GOS15", "", "" ], [ "P30936-1", "SSR-28", "", "" ], [ "P02761-1", "Allergen Rat n I", "", "" ], [ "P02761-1", "alpha-2u globulin PGCL1", "", "" ], [ "P02761-1", "Alpha(2)-euglobulin", "", "" ], [ "P02761-1", "Alpha-2u-globulin", "", "" ], [ "Q9QYH1-1", "Discs large homolog 6", "rDLG6", "" ], [ "P02764-1", "Orosomucoid", "OMD", "" ], [ "P02767-1", "Prealbumin", "", "" ], [ "P02767-1", "TBPA", "", "" ], [ "P39020-1", "Growth arrest-specific homeobox", "", "" ], [ "P39020-1", "Mesenchyme homeobox 2", "", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LH-B", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LSH-B", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LSH-beta", "" ], [ "P09006-1", "Serine protease inhibitor 3", "SPI-3", "" ], [ "P09006-1", "Contrapsin-like protease inhibitor 6", "", "" ], [ "P09006-1", "CPI-26", "", "" ], [ "P09006-1", "SPI-2.2", "", "" ], [ "Q9JHY8-1", "DNA ligase I", "", "" ], [ "Q9JHY8-1", "Polydeoxyribonucleotide synthase [ATP] 1", "", "" ], [ "Q9JHY1-1", "Junctional adhesion molecule 1", "JAM-1", "" ], [ "Q9JHY7-1", "Apoptosis inhibitor survivin", "", "" ], [ "Q02874-1", "H2A.y", "", "" ], [ "Q02874-1", "H2A/y", "", "" ], [ "P08699-1", "Carbohydrate-binding protein 35", "CBP 35", "" ], [ "P08699-1", "Lectin L-29", "", "" ], [ "P08699-1", "IgE-binding protein", "", "" ], [ "P08699-1", "Mac-2 antigen", "", "" ], [ "P08699-1", "35 kDa lectin", "", "" ], [ "P08699-1", "Laminin-binding protein", "", "" ], [ "P08699-1", "Galactose-specific lectin 3", "", "" ], [ "P56558-1", "O-linked N-acetylglucosamine transferase 110 kDa subunit", "", "" ], [ "P56558-1", "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit", "", "" ], [ "P08011-1", "Microsomal GST-I", "", "" ], [ "Q99JD4-1", "Cytoplasmic linker-associated protein 2", "", "" ], [ "Q99JD3-1", "Solute carrier family 25 member 21", "", "" ], [ "P18508-1", "Gamma-aminobutyric acid receptor subunit gamma-2", "", "" ], [ "P22002-1", "Rat brain class C", "RBC", "" ], [ "P22002-1", "Voltage-gated calcium channel subunit alpha Cav1.2", "", "" ], [ "P22002-1", "Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle", "", "" ], [ "Q02294-1", "Brain calcium channel III", "BIII", "" ], [ "Q02294-1", "Calcium channel, L type, alpha-1 polypeptide isoform 5", "", "" ], [ "Q02294-1", "Voltage-gated calcium channel subunit alpha Cav2.2", "", "" ], [ "Q02293-1", "Ras proteins prenyltransferase subunit beta", "", "" ], [ "Q02293-1", "CAAX farnesyltransferase subunit beta", "", "" ], [ "Q8K5E0-1", "snGPCR32", "", "" ], [ "Q8K5E0-1", "Lysophosphatidic acid receptor Edg-7", "", "" ], [ "Q9R1N3-1", "Solute carrier family 4 member 7", "", "" ], [ "Q9R1N3-1", "NBC-like protein", "", "" ], [ "Q9R1N3-1", "Electroneutral sodium bicarbonate cotransporter 1", "", "" ], [ "P22006-1", "Seminal vesicle secretory protein II", "SVS II", "" ], [ "D3ZSP1-1", "Sm protein E", "", "" ], [ "D3ZSP7-1", "TPR repeat protein D", "", "" ], [ "D3ZSP7-1", "RING-type E3 ubiquitin transferase TTC3", "", "" ], [ "P48550-1", "BIR1", "", "" ], [ "P48550-1", "Inward rectifier K(+) channel Kir3.2", "", "" ], [ "P48550-1", "KATP-2", "", "" ], [ "P48550-1", "Potassium channel, inwardly rectifying subfamily J member 6", "", "" ], [ "O88664-1", "Thousand and one amino acid protein 1", "", "" ], [ "P00176-1", "Cytochrome P450-B", "Cytochrome P450b", "" ], [ "P00176-1", "Cytochrome P450-PB2", "", "" ], [ "P00176-1", "Cytochrome P450-LM2", "", "" ], [ "P00176-1", "CYPIIB1", "", "" ], [ "P00176-1", "Cytochrome P450-PB1", "", "" ], [ "Q9QYH7-1", "Growth hormone secretagogue", "", "" ] ] }, "readme": "Name\n - Rat Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.991804\n\nModified on\n - 2020-04-10T12:05:45.412679\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] proteins. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_altnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_altnames.csv\n Name: rat_protein_altnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_altnames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_altnames.csv" }