{ "bcoid": "GLY_000250", "title": "Rat UniProtKB Xref KEGG PATHWAY", "description": "The Rat UniProtKB Xref KEGG PATHWAY contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Kegg Pathway cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB44-1...", "protein_xref..." ], [ "D3ZB48-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "D3ZB44-1", "protein_xref_kegg", "rno:365192", "" ], [ "D3ZB48-1", "protein_xref_kegg", "rno:313370", "" ], [ "Q0HA29-1", "protein_xref_kegg", "rno:289095", "" ], [ "A0A0G2JVG8-1", "protein_xref_kegg", "rno:405322", "" ], [ "Q99372-1", "protein_xref_kegg", "rno:25043", "" ], [ "A0A096MJY4-1", "protein_xref_kegg", "rno:499497", "" ], [ "A0A096MJY1-1", "protein_xref_kegg", "rno:691984", "" ], [ "A0A0G2K4P4-1", "protein_xref_kegg", "rno:500693", "" ], [ "Q5RJK6-1", "protein_xref_kegg", "rno:316376", "" ], [ "Q62949-1", "protein_xref_kegg", "rno:25305", "" ], [ "P01946-1", "protein_xref_kegg", "rno:25632", "" ], [ "P01946-1", "protein_xref_kegg", "rno:360504", "" ], [ "Q5M9G9-1", "protein_xref_kegg", "rno:360977", "" ], [ "O35152-1", "protein_xref_kegg", "rno:54400", "" ], [ "P30936-1", "protein_xref_kegg", "rno:171044", "" ], [ "O35158-1", "protein_xref_kegg", "rno:50938", "" ], [ "P02764-1", "protein_xref_kegg", "rno:24614", "" ], [ "P02767-1", "protein_xref_kegg", "rno:24856", "" ], [ "D4A4W8-1", "protein_xref_kegg", "rno:292301", "" ], [ "D4A4W0-1", "protein_xref_kegg", "rno:293781", "" ], [ "D4A4W4-1", "protein_xref_kegg", "rno:366836", "" ], [ "D4A4W5-1", "protein_xref_kegg", "rno:303056", "" ], [ "D4A4W6-1", "protein_xref_kegg", "rno:688717", "" ], [ "D4A4W7-1", "protein_xref_kegg", "rno:689931", "" ], [ "G3V6I3-1", "protein_xref_kegg", "rno:360613", "" ], [ "P21932-1", "protein_xref_kegg", "rno:64508", "" ], [ "Q8K4K5-1", "protein_xref_kegg", "rno:54265", "" ], [ "G3V6I4-1", "protein_xref_kegg", "rno:690745", "" ], [ "P12749-1", "protein_xref_kegg", "rno:287417", "" ], [ "P39020-1", "protein_xref_kegg", "rno:29279", "" ], [ "A0A0G2K0T8-1", "protein_xref_kegg", "rno:684972", "" ], [ "D3ZVR6-1", "protein_xref_kegg", "rno:294601", "" ], [ "P01237-1", "protein_xref_kegg", "rno:24683", "" ], [ "P01230-1", "protein_xref_kegg", "rno:25329", "" ], [ "M0RB72-1", "protein_xref_kegg", "rno:688163", "" ], [ "P09006-1", "protein_xref_kegg", "rno:24795", "" ], [ "M0RB75-1", "protein_xref_kegg", "rno:301128", "" ], [ "Q9JHY1-1", "protein_xref_kegg", "rno:116479", "" ], [ "Q9JHY2-1", "protein_xref_kegg", "rno:65042", "" ], [ "Q9JHY7-1", "protein_xref_kegg", "rno:64041", "" ], [ "Q02874-1", "protein_xref_kegg", "rno:29384", "" ], [ "P08699-1", "protein_xref_kegg", "rno:83781", "" ], [ "P56558-1", "protein_xref_kegg", "rno:26295", "" ], [ "P08011-1", "protein_xref_kegg", "rno:171341", "" ], [ "Q8CJ58-1", "protein_xref_kegg", "rno:261738", "" ], [ "Q99JD4-1", "protein_xref_kegg", "rno:114514", "" ], [ "Q99JD1-1", "protein_xref_kegg", "rno:171412", "" ], [ "Q99JD3-1", "protein_xref_kegg", "rno:171151", "" ], [ "Q99JD2-1", "protein_xref_kegg", "rno:85270", "" ], [ "P22002-1", "protein_xref_kegg", "rno:24239", "" ], [ "Q02293-1", "protein_xref_kegg", "rno:64511", "" ], [ "M0R8G9-1", "protein_xref_kegg", "rno:300599", "" ], [ "D3ZGR8-1", "protein_xref_kegg", "rno:405051", "" ], [ "D3ZGR7-1", "protein_xref_kegg", "rno:288920", "" ], [ "Q8K5E0-1", "protein_xref_kegg", "rno:66025", "" ], [ "Q9R1N3-1", "protein_xref_kegg", "rno:117955", "" ], [ "D3ZIY3-1", "protein_xref_kegg", "rno:361920", "" ], [ "P48550-1", "protein_xref_kegg", "rno:25743", "" ], [ "D3ZFP5-1", "protein_xref_kegg", "rno:691352", "" ], [ "D3ZFP4-1", "protein_xref_kegg", "rno:316273", "" ], [ "D3ZFP7-1", "protein_xref_kegg", "rno:293166", "" ], [ "D3ZFP6-1", "protein_xref_kegg", "rno:308768", "" ], [ "D3ZYL2-1", "protein_xref_kegg", "rno:292199", "" ], [ "D3ZYL3-1", "protein_xref_kegg", "rno:685641", "" ], [ "D3ZYL0-1", "protein_xref_kegg", "rno:306886", "" ], [ "D4A131-1", "protein_xref_kegg", "rno:363023", "" ], [ "D4A130-1", "protein_xref_kegg", "rno:405066", "" ], [ "D4A133-1", "protein_xref_kegg", "rno:685232", "" ], [ "P09875-1", "protein_xref_kegg", "rno:305264", "" ], [ "D4A138-1", "protein_xref_kegg", "rno:288909", "" ], [ "D3ZCS5-1", "protein_xref_kegg", "rno:287634", "" ], [ "D3ZCS4-1", "protein_xref_kegg", "rno:310621", "" ], [ "D3ZHE2-1", "protein_xref_kegg", "rno:364147", "" ], [ "D3ZCS1-1", "protein_xref_kegg", "rno:498246", "" ], [ "D3ZHE5-1", "protein_xref_kegg", "rno:303337", "" ], [ "D3ZCS2-1", "protein_xref_kegg", "rno:497886", "" ], [ "Q9JIL8-1", "protein_xref_kegg", "rno:64012", "" ], [ "D3ZCS9-1", "protein_xref_kegg", "rno:293613", "" ], [ "D3ZCS8-1", "protein_xref_kegg", "rno:405303", "" ], [ "O88664-1", "protein_xref_kegg", "rno:286993", "" ], [ "A0A0G2KAH3-1", "protein_xref_kegg", "rno:315497", "" ], [ "D3ZUF5-1", "protein_xref_kegg", "rno:363472", "" ], [ "D3ZUF1-1", "protein_xref_kegg", "rno:362133", "" ], [ "Q6P5P4-1", "protein_xref_kegg", "rno:305970", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref KEGG PATHWAY\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.976805\n\nModified on\n - 2022-01-19T13:16:02.742545\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref KEGG PATHWAY contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks. \n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_kegg.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_kegg.csv\n Name: rat_protein_xref_kegg.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_kegg.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_kegg.csv" }