{ "bcoid": "GLY_000227", "title": "Rat UniProtKB Xref ChEMBL", "description": "The Rat UniprotKB Xref ChEMBL contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Chembl cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30938-1...", "protein_xref..." ], [ "Q07969-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30938-1", "protein_xref_chembl", "CHEMBL4318", "" ], [ "Q07969-1", "protein_xref_chembl", "CHEMBL2163174", "" ], [ "P30936-1", "protein_xref_chembl", "CHEMBL3340", "" ], [ "P02764-1", "protein_xref_chembl", "CHEMBL3709434", "" ], [ "P02767-1", "protein_xref_chembl", "CHEMBL2151", "" ], [ "P22002-1", "protein_xref_chembl", "CHEMBL3762", "" ], [ "Q02294-1", "protein_xref_chembl", "CHEMBL5107", "" ], [ "Q02293-1", "protein_xref_chembl", "CHEMBL2095197", "" ], [ "Q8K5E0-1", "protein_xref_chembl", "CHEMBL4424", "" ], [ "D3ZYL0-1", "protein_xref_chembl", "CHEMBL4523112", "" ], [ "P00176-1", "protein_xref_chembl", "CHEMBL3335", "" ], [ "P09660-1", "protein_xref_chembl", "CHEMBL4961", "" ], [ "P32301-1", "protein_xref_chembl", "CHEMBL5862", "" ], [ "P26433-1", "protein_xref_chembl", "CHEMBL3879842", "" ], [ "O35795-1", "protein_xref_chembl", "CHEMBL3300", "" ], [ "O70276-1", "protein_xref_chembl", "CHEMBL4523147", "" ], [ "P31016-1", "protein_xref_chembl", "CHEMBL3797015", "" ], [ "Q9ERD9-1", "protein_xref_chembl", "CHEMBL4523451", "" ], [ "O88457-1", "protein_xref_chembl", "CHEMBL2629", "" ], [ "Q62735-1", "protein_xref_chembl", "CHEMBL4105917", "" ], [ "Q9Z1Z1-1", "protein_xref_chembl", "CHEMBL4105946", "" ], [ "Q63009-1", "protein_xref_chembl", "CHEMBL1275220", "" ], [ "P04176-1", "protein_xref_chembl", "CHEMBL3077", "" ], [ "P04177-1", "protein_xref_chembl", "CHEMBL2462", "" ], [ "Q04666-1", "protein_xref_chembl", "CHEMBL4105998", "" ], [ "Q4FZV0-1", "protein_xref_chembl", "CHEMBL3431", "" ], [ "Q63449-1", "protein_xref_chembl", "CHEMBL2596", "" ], [ "P14423-1", "protein_xref_chembl", "CHEMBL3686", "" ], [ "O88496-1", "protein_xref_chembl", "CHEMBL2744", "" ], [ "P21961-1", "protein_xref_chembl", "CHEMBL4523202", "" ], [ "O35346-1", "protein_xref_chembl", "CHEMBL5773", "" ], [ "E9PU00-1", "protein_xref_chembl", "CHEMBL4295541", "" ], [ "P45352-1", "protein_xref_chembl", "CHEMBL4341", "" ], [ "Q9Z0Y8-1", "protein_xref_chembl", "CHEMBL5459", "" ], [ "P63059-1", "protein_xref_chembl", "CHEMBL4823", "" ], [ "P11762-1", "protein_xref_chembl", "CHEMBL4523183", "" ], [ "Q01986-1", "protein_xref_chembl", "CHEMBL3430876", "" ], [ "Q01984-1", "protein_xref_chembl", "CHEMBL3241", "" ], [ "P50339-1", "protein_xref_chembl", "CHEMBL3168", "" ], [ "D4ADR1-1", "protein_xref_chembl", "CHEMBL4295535", "" ], [ "P35411-1", "protein_xref_chembl", "CHEMBL2346491", "" ], [ "P70496-1", "protein_xref_chembl", "CHEMBL3308939", "" ], [ "Q62976-1", "protein_xref_chembl", "CHEMBL5505", "" ], [ "P08683-1", "protein_xref_chembl", "CHEMBL4971", "" ], [ "P08689-1", "protein_xref_chembl", "CHEMBL4932", "" ], [ "Q8CJ44-1", "protein_xref_chembl", "CHEMBL3769295", "" ], [ "O70594-1", "protein_xref_chembl", "CHEMBL1075238", "" ], [ "Q66H76-1", "protein_xref_chembl", "CHEMBL5613", "" ], [ "Q6MGC4-1", "protein_xref_chembl", "CHEMBL2096", "" ], [ "P06536-1", "protein_xref_chembl", "CHEMBL3368", "" ], [ "P30083-1", "protein_xref_chembl", "CHEMBL1955712", "" ], [ "P30082-1", "protein_xref_chembl", "CHEMBL4720", "" ], [ "P35570-1", "protein_xref_chembl", "CHEMBL1163110", "" ], [ "P09760-1", "protein_xref_chembl", "CHEMBL4523172", "" ], [ "O08816-1", "protein_xref_chembl", "CHEMBL3774296", "" ], [ "P19139-1", "protein_xref_chembl", "CHEMBL3988629", "" ], [ "P11497-1", "protein_xref_chembl", "CHEMBL2397", "" ], [ "Q924C3-1", "protein_xref_chembl", "CHEMBL4295913", "" ], [ "P08104-1", "protein_xref_chembl", "CHEMBL4966", "" ], [ "P17425-1", "protein_xref_chembl", "CHEMBL2189", "" ], [ "O08590-1", "protein_xref_chembl", "CHEMBL4592", "" ], [ "P26284-1", "protein_xref_chembl", "CHEMBL2176823", "" ], [ "Q06000-1", "protein_xref_chembl", "CHEMBL5906", "" ], [ "P70597-1", "protein_xref_chembl", "CHEMBL5068", "" ], [ "P70596-1", "protein_xref_chembl", "CHEMBL2700", "" ], [ "Q6TEK4-1", "protein_xref_chembl", "CHEMBL4105870", "" ], [ "O88269-1", "protein_xref_chembl", "CHEMBL2073712", "" ], [ "Q62674-1", "protein_xref_chembl", "CHEMBL1287615", "" ], [ "D3Z9J1-1", "protein_xref_chembl", "CHEMBL4523111", "" ], [ "P10719-1", "protein_xref_chembl", "CHEMBL2176796", "" ], [ "P45446-2", "protein_xref_chembl", "CHEMBL4105721", "" ], [ "B5DFI9-1", "protein_xref_chembl", "CHEMBL2096663", "" ], [ "Q9JLS3-1", "protein_xref_chembl", "CHEMBL4523465", "" ], [ "P16638-1", "protein_xref_chembl", "CHEMBL2745", "" ], [ "Q8R431-1", "protein_xref_chembl", "CHEMBL3321", "" ], [ "P33436-1", "protein_xref_chembl", "CHEMBL1075175", "" ], [ "Q9JHI3-1", "protein_xref_chembl", "CHEMBL2073698", "" ], [ "P24062-1", "protein_xref_chembl", "CHEMBL1075098", "" ], [ "P00185-1", "protein_xref_chembl", "CHEMBL2922", "" ], [ "P97687-1", "protein_xref_chembl", "CHEMBL2767", "" ], [ "Q62730-1", "protein_xref_chembl", "CHEMBL1914268", "" ], [ "P32214-1", "protein_xref_chembl", "CHEMBL2204", "" ], [ "Q11205-1", "protein_xref_chembl", "CHEMBL3638362", "" ], [ "P28037-1", "protein_xref_chembl", "CHEMBL3414419", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref ChEMBL\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.955413\n\nModified on\n - 2022-01-19T11:36:36.735118\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref ChEMBL contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-05 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties. \n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/rat_protein_masterlist.csv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_chembl.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_chembl.csv\n Name: rat_protein_xref_chembl.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_chembl.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/rat_protein_xref_chembl.csv" }