{ "bcoid": "GLY_000126", "title": "Mouse UniProtKB Xref Reactome", "description": "TheMouse UniProtKB Xref Reactome contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_reactome.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Reactome cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9JHR7-1...", "protein_xref..." ], [ "Q9JHR7-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9JHR7-1", "protein_xref_reactome", "R-MMU-5689880", "Ub-specific processing proteases" ], [ "Q9JHR7-1", "protein_xref_reactome", "R-MMU-9033241", "Peroxisomal protein import" ], [ "Q9JHR7-1", "protein_xref_reactome", "R-MMU-9033241", "Peroxisomal protein import" ], [ "B2RXV4-1", "protein_xref_reactome", "R-MMU-917937", "Iron uptake and transport" ], [ "B2RXV4-1", "protein_xref_reactome", "R-MMU-189451", "Heme biosynthesis" ], [ "B2RXV4-1", "protein_xref_reactome", "R-MMU-189451", "Heme biosynthesis" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-141430", "Inactivation of APC/C via direct inhibition of the APC/C complex" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-141444", "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-141444", "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-141444", "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-141444", "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2500257", "Resolution of Sister Chromatid Cohesion" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2500257", "Resolution of Sister Chromatid Cohesion" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2467813", "Separation of Sister Chromatids" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2467813", "Separation of Sister Chromatids" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2500257", "Resolution of Sister Chromatid Cohesion" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-2500257", "Resolution of Sister Chromatid Cohesion" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-68877", "Mitotic Prometaphase" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-5663220", "RHO GTPases Activate Formins" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-5663220", "RHO GTPases Activate Formins" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-5663220", "RHO GTPases Activate Formins" ], [ "E9Q3P4-1", "protein_xref_reactome", "R-MMU-9648025", "EML4 and NUDC in mitotic spindle formation" ], [ "P03899-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03899-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03899-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03899-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03899-1", "protein_xref_reactome", "R-MMU-611105", "Respiratory electron transport" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6807878", "COPI-mediated anterograde transport" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6807878", "COPI-mediated anterograde transport" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6807878", "COPI-mediated anterograde transport" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6807878", "COPI-mediated anterograde transport" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6811438", "Intra-Golgi traffic" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6811438", "Intra-Golgi traffic" ], [ "O35153-1", "protein_xref_reactome", "R-MMU-6811438", "Intra-Golgi traffic" ], [ "P03893-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03893-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03893-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03893-1", "protein_xref_reactome", "R-MMU-6799198", "Complex I biogenesis" ], [ "P03893-1", "protein_xref_reactome", "R-MMU-611105", "Respiratory electron transport" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5668541", "TNFR2 non-canonical NF-kB pathway" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5668541", "TNFR2 non-canonical NF-kB pathway" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5668541", "TNFR2 non-canonical NF-kB pathway" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5668541", "TNFR2 non-canonical NF-kB pathway" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5676594", "TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway" ], [ "Q9QYH9-1", "protein_xref_reactome", "R-MMU-5676594", "TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway" ], [ "P52479-1", "protein_xref_reactome", "R-MMU-5656169", "Termination of translesion DNA synthesis" ], [ "P52479-1", "protein_xref_reactome", "R-MMU-5656169", "Termination of translesion DNA synthesis" ], [ "P52479-1", "protein_xref_reactome", "R-MMU-5689880", "Ub-specific processing proteases" ], [ "P52479-1", "protein_xref_reactome", "R-MMU-5689880", "Ub-specific processing proteases" ], [ "P52479-1", "protein_xref_reactome", "R-MMU-5689880", "Ub-specific processing proteases" ], [ "P70414-1", "protein_xref_reactome", "R-MMU-418359", "Reduction of cytosolic Ca++ levels" ], [ "P70414-1", "protein_xref_reactome", "R-MMU-5578775", "Ion homeostasis" ], [ "P70414-1", "protein_xref_reactome", "R-MMU-425561", "Sodium/Calcium exchangers" ], [ "P70419-1", "protein_xref_reactome", "R-MMU-913709", "O-linked glycosylation of mucins" ], [ "P70419-1", "protein_xref_reactome", "R-MMU-190372", "FGFR3c ligand binding and activation" ], [ "Q9EP78-1", "protein_xref_reactome", "R-MMU-2022870", "Chondroitin sulfate biosynthesis" ], [ "Q9EP73-1", "protein_xref_reactome", "R-MMU-389948", "PD-1 signaling" ], [ "Q9EP73-1", "protein_xref_reactome", "R-MMU-389948", "PD-1 signaling" ], [ "Q9EP73-1", "protein_xref_reactome", "R-MMU-389948", "PD-1 signaling" ], [ "Q9EP73-1", "protein_xref_reactome", "R-MMU-389948", "PD-1 signaling" ], [ "Q9EP75-1", "protein_xref_reactome", "R-MMU-211935", "Fatty acids" ], [ "Q9EP75-1", "protein_xref_reactome", "R-MMU-211979", "Eicosanoids" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-168638", "NOD1/2 Signaling Pathway" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-4420097", "VEGFA-VEGFR2 Pathway" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-525793", "Myogenesis" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-525793", "Myogenesis" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-376172", "DSCAM interactions" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-5675221", "Negative regulation of MAPK pathway" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-5675221", "Negative regulation of MAPK pathway" ], [ "O08911-1", "protein_xref_reactome", "R-MMU-5675221", "Negative regulation of MAPK pathway" ], [ "O08912-1", "protein_xref_reactome", "R-MMU-6811436", "COPI-independent Golgi-to-ER retrograde traffic" ], [ "O08912-1", "protein_xref_reactome", "R-MMU-6811436", "COPI-independent Golgi-to-ER retrograde traffic" ], [ "O08912-1", "protein_xref_reactome", "R-MMU-6811436", "COPI-independent Golgi-to-ER retrograde traffic" ], [ "O08912-1", "protein_xref_reactome", "R-MMU-913709", "O-linked glycosylation of mucins" ], [ "O08915-1", "protein_xref_reactome", "R-MMU-8937144", "Aryl hydrocarbon receptor signalling" ], [ "O08915-1", "protein_xref_reactome", "R-MMU-8937144", "Aryl hydrocarbon receptor signalling" ], [ "O08915-1", "protein_xref_reactome", "R-MMU-8937144", "Aryl hydrocarbon receptor signalling" ], [ "O08914-1", "protein_xref_reactome", "R-MMU-2142753", "Arachidonic acid metabolism" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-5213460", "RIPK1-mediated regulated necrosis" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-8849932", "Synaptic adhesion-like molecules" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-8980692", "RHOA GTPase cycle" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-9013026", "RHOB GTPase cycle" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-9013106", "RHOC GTPase cycle" ], [ "O08917-1", "protein_xref_reactome", "R-MMU-5675482", "Regulation of necroptotic cell death" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref Reactome\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T16:16:23.633025\n\nModified on\n - 2022-01-19T11:02:40.508232\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - TheMouse UniProtKB Xref Reactome contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Reactome database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - REACTOME\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to REACTOME database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/mouse_protein_masterlist.csv\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_reactome.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_reactome.csv\n Name: mouse_protein_xref_reactome.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_reactome.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_reactome.csv" }